Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2931 CCCTCCATAGTCGCCGCCGTTCCCAGGTCGTCGAACCCTAACCCAGTAACTCGGCAGGTACTCTTCATCTTCGCTGGCTTCTCGGCACCGAACCCAGTTTGGTTCTTCAATTCTTCTTCTTCGGTCTTCCGTCTTGGTTTCCAGTTTGGTATTCCCTTGTATTTGCTGGTGGTTAATGGTGGAAATTTTACAAATTTGCAAATTTGTATTGTTTTAGTCAGTAATACTTACTCTGATGGCTCTGATAGTGTTTTACTGGTTTACCAGTTGCTGATGGCTCCTAATTTGTTTGTTGCAATATTGTTGAATGCTGGCATGGAGGGGCAACAGAACAAGACGGTGAGAATATTTGTCGGTGGATTGGGGGAATCAGTAACTAAACAAGACCTACACAGTTTGTTCAGCTCTTTCGGCAATGTCGAAGCAGTCGAAACAATCCGAACCAAAGGTCGCAGTTTCGCCTATCTTGACTTCCTTCCTTTTCCCACCGATGACAAATCTCTTTCCAGGCTTTTTAGCAAGTATAATGGTTGTGTTTGGAAGGGTGAGAAGTTGAAGCTTGAGAAGGCTAAAGAACATTATCTAGTGCGGTTGAAACGAGAATGGGATGAAGATGCTATGTCTAAGATTGAGCATGTTAGTGACAAACCAGTCACTACTGATAAGTTAGAGGAAAAGCCCACAAAAGAGAGTTTAAAGACAAAGCAGCTCCACATTTACTTCCCGAGGTTAAGAAAGAGACTTCAGGGAATGTTTGCAACATTTGAAGCCTTGAAGACTCGTTGTTGCCTTCTAGCATGGATAGGGCACATTTGTAGGAATATGTGTGTCATTTGGAGGCTGAGACAGAGAGAAGGGATGAATGAGGCTGCAACAGAGGAAGAAGAACCTAATTGGGTTACCCAAGTTTCAGAAGATGATTTTGGCAAACCGTCTAAAGTTTCATGGTCTCAGAAATCATCATGGAAAGAACTACTTGGTAATGGAGGTAATACTGCTTTCAATGGCACTCTCATATTTCCTACAGAACAAGAAAGACCTGATAGTCCATCCCAATCCATATCTTTAAACGACAAAACTGAAAACATGGAAGGGCATGAACACCTAGGGAGTGAACCCACCGATACAGAATCGACAAAGGAGCTCACTGAAGATAATCATACCAACACATCAGCATTAAGAAAGCATGCTGAAKCTCAGCCTGCTGACAACAATGTGRAGTTGAAGAAGACCGGTCGAGGTGCATCATGGCGACGGAAGCAATCATGGACACAACTGGTTGCTGGAGACAACAGTTCATTTAGCATTTCACAGATTTTGGCAGGCATTACATTCTCAGAGCCAATGGCCAAGGGGTCTACCGTGGACCCTGCAAATTCCAACAATCCCAAGCATAATAATGTAGGTAAGGATGCCATTAATGAAGTTGTTACTAGTGATGGGYGTATACCGGAAAAGAGYCAACATGATGGTGGTGGTGCCAATGATACTGCATATGAGGAAAAGAGTGAGACAAGAGAAAAGGAAGGATCGTCTGAAGAAACAGTACAAAAAGAGAGATCCACTGCGAGGGTTGAAGTAGGCGAAACTTGCACATTCATGAGAAGTTGTTCTTCTTTGAAAGAGTGGGCGAAGGCTAAAGCTGCTTTAAGTGGATCACTCAAAAGGAAACGTCCCAACTCCTGA 1686 0.4336 PSIVAAVPRSSNPNPVTRQVLFIFAGFSAPNPVWFFNSSSSVFRLGFQFGIPLYLLVVNGGNFTNLQICIVLVSNTYSDGSDSVLLVYQLLMAPNLFVAILLNAGMEGQQNKTVRIFVGGLGESVTKQDLHSLFSSFGNVEAVETIRTKGRSFAYLDFLPFPTDDKSLSRLFSKYNGCVWKGEKLKLEKAKEHYLVRLKREWDEDAMSKIEHVSDKPVTTDKLEEKPTKESLKTKQLHIYFPRLRKRLQGMFATFEALKTRCCLLAWIGHICRNMCVIWRLRQREGMNEAATEEEEPNWVTQVSEDDFGKPSKVSWSQKSSWKELLGNGGNTAFNGTLIFPTEQERPDSPSQSISLNDKTENMEGHEHLGSEPTDTESTKELTEDNHTNTSALRKHAEXQPADNNVXLKKTGRGASWRRKQSWTQLVAGDNSSFSISQILAGITFSEPMAKGSTVDPANSNNPKHNNVGKDAINEVVTSDGXIPEKSQHDGGGANDTAYEEKSETREKEGSSEETVQKERSTARVEVGETCTFMRSCSSLKEWAKAKAALSGSLKRKRPNS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2931 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Amo17g2931 561 PANTHER TRANSCRIPTIONAL REGULATOR 106 248 - -
Amo17g2931 561 PANTHER TRANSCRIPTIONAL REGULATOR 294 560 - -
Amo17g2931 561 Gene3D - 103 194 IPR012677 -
Amo17g2931 561 MobiDBLite consensus disorder prediction 360 392 - -
Amo17g2931 561 MobiDBLite consensus disorder prediction 334 359 - -
Amo17g2931 561 MobiDBLite consensus disorder prediction 495 525 - -
Amo17g2931 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 158 IPR000504 GO:0003723
Amo17g2931 561 SUPERFAMILY RNA-binding domain, RBD 107 209 IPR035979 GO:0003676
Amo17g2931 561 MobiDBLite consensus disorder prediction 334 416 - -
Amo17g2931 561 MobiDBLite consensus disorder prediction 453 468 - -
Amo17g2931 561 MobiDBLite consensus disorder prediction 449 528 - -
Amo17g2931 561 SMART rrm1_1 115 188 IPR000504 GO:0003723
Amo17g2931 561 CDD RRM_NOL8 115 191 IPR034138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2931 Amo-Chr17 131529955 131536882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2931 90 209 Eukaryotic Initiation Factors Gene Family AT3G16380 28.682 2.11e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2931 - - ahf:112751244 492.656