Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2917 ATGACATCTGCATCAAGTGAGATAAGTGCCTCTACTTCGCTACCAATAAAGAAGAAGAGAAATCTCCCAGGCCACCCAGACCCTGATGCTGAAGTGATAGCCTTATCACCAAAGAGCCTGTTGGCAACAAACCGGTTCGTTTGTGATGTTTGCAACAAAGGGTTTCAAAGAGACCAGAATCTGCAGCTTCATAGAAGGGGCCACAATCTGCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGATAATAAGGAAGAAGGTGTACGTTTGTCCAGAGCCAACTTGCGTTCACCATGACCCCTCAAGGGCACTCGGCGACCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAGGTGCTCCAAGCGCTACGCCGTTCATTCAGATTGGAAAGCTCACTCCAAAATATGTGGCACCCGAGAGTACAAATGTGACTGCGGAACCATTTTTTCCAGGAGGGATAGTTTCATCGCTCACAGGGCATTCTGTGATGCTCTAGCACAAGAGAGTACGAAAGCAATCACAACCTTGTTCAACCCATCATCATCAGTGAAGAAGGAATTGCAAGAAGTTAATTTAAGATCAGAAAATCGTCCATTATGGTTGTCTTACTCAACCTCGGTTGGAGGAGAAGGAAGCCATGGAAGAGTAGTTCATAACAATAATAATAATATAATAATAATAATTCAACATTATTATTCTCCTCGCCGCCGCCGCCGTCGACGTCGCTGCTTTCTACAATGA 768 0.4518 MTSASSEISASTSLPIKKKRNLPGHPDPDAEVIALSPKSLLATNRFVCDVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDRCSKRYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFIAHRAFCDALAQESTKAITTLFNPSSSVKKELQEVNLRSENRPLWLSYSTSVGGEGSHGRVVHNNNNNIIIIIQHYYSPRRRRRRRRCFLQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2917 255 Gene3D Classic Zinc Finger 46 91 - -
Amo17g2917 255 SMART c2h2final6 123 143 IPR013087 -
Amo17g2917 255 SMART c2h2final6 88 118 IPR013087 -
Amo17g2917 255 SMART c2h2final6 46 68 IPR013087 -
Amo17g2917 255 SUPERFAMILY beta-beta-alpha zinc fingers 45 143 IPR036236 -
Amo17g2917 255 Pfam Zinc-finger of C2H2 type 46 68 - -
Amo17g2917 255 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 194 - -
Amo17g2917 255 MobiDBLite consensus disorder prediction 1 16 - -
Amo17g2917 255 Gene3D Classic Zinc Finger 101 181 - -
Amo17g2917 255 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Amo17g2917 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Amo17g2917 255 MobiDBLite consensus disorder prediction 1 29 - -
Amo17g2917 255 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 8 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2917 Amo-Chr17 131363852 131366447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2917 17 181 IDZ Gene Family AT3G50700 85.455 2.65e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo17g2917 zf-met 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2917 K25870 - qsu:112016383 342.813