Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2912 ATGGCGGGAAGAATGAGAGTGAAGGAGGAAGAGGAGACTGTGGTTTTGTGTGGGAGCGGACCAGGTGGTTCATCTTCTTCATCAAGCGTGTCACCGCAACCCATGGAAGGGTTGCACGATGTGGGACCACCACCGTTTCTGACGAAGACCTTCGAAGTGGTGGAGGATCCTTCCACCGACTCCATTGTTTCTTGGAGCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCGCACAGATTCTCCACCACGATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGGTTTAGGAAAGTGGATCCTGATCGATGGGAATTTGCGAACGAGGGGTTCTTGGCAGGGCAGAAGCACTTGTTGAGGACGATAAAGAGGAGGAGGAATGTGACGCAGTCGTCAACGAACACGATCCAGCATGGAGAAGGAGGAGGAGGAGGAAGTTGTGTTGAGTTAGGTGAGTTTGGTTTGGAAGGTGAGATAGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCAGCAACAGCACAACTCAAGGGAGCGGATTTGTTCAATGGAGTCAAGGTTGCAAGTCACAGAGAAGAAACAAACTCAGATGATGACTTTCCTGGCCAAAGCACTCCACAACCAGTCTTTCATTCATAACCTTTCTCTTCAGAACAGAGAATTACAGGGTTTTGAGATGAGCAGGAAGAGGAGAATAACTGCTACCGCAAGTGTGGAGAATCTGCAAGAGGATCCTGTTGCTGTTGAAGAGCAAGAGGAATTGACGAGTATTGGGTGTGAGATAGAGACACTTTTGTCAAGTGCTTGCGATAATGAATCAAGCAGTGAAATGAAGGAGCCTACTGCTGCTGCTGCTGCTGCTACCAGTGAGAATATATGGGAAGATTTGCTTAGTGAGGATTTAGTTGGTGGGAATCCGGAGGATGAAGTTGTCATTGGTGATTACCCACACCAAAATCTTGAAGATTTGGCTGCAACAAACACTGGTGATTGGTCTGAAGACTTGCAGAAACTTGTGGATCATATGGGTTTTCTTGCCTCTAATCCATAA 1101 0.4814 MAGRMRVKEEEETVVLCGSGPGGSSSSSSVSPQPMEGLHDVGPPPFLTKTFEVVEDPSTDSIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLRTIKRRRNVTQSSTNTIQHGEGGGGGSCVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSRERICSMESRLQVTEKKQTQMMTFLAKALHNQSFIHNLSLQNRELQGFEMSRKRRITATASVENLQEDPVAVEEQEELTSIGCEIETLLSSACDNESSSEMKEPTAAAAAATSENIWEDLLSEDLVGGNPEDEVVIGDYPHQNLEDLAATNTGDWSEDLQKLVDHMGFLASNP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2912 366 Gene3D - 39 136 IPR036388 -
Amo17g2912 366 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 322 IPR027725 -
Amo17g2912 366 MobiDBLite consensus disorder prediction 19 34 - -
Amo17g2912 366 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 MobiDBLite consensus disorder prediction 1 38 - -
Amo17g2912 366 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 322 - -
Amo17g2912 366 Coils Coil 169 189 - -
Amo17g2912 366 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2912 366 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2912 Amo-Chr17 131291984 131294301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2912 32 366 HSF AT2G26150 52.212 2.03e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo17g2912 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2912 K09419 - gmx:100794605 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4018 16 152328889 152331129 Amo17g2912 17 131291984 131294301 PCT
Amo17g2912 17 131291984 131294301 Amo16g4018 16 152328889 152331129 PCT