Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2910 ATGGCCGCCGTGGTTCGAGCTCCTCCGAAGGATTTCCGACTGGTCAGGGAAGAATGGGCCGCCATCAGAATCCAAACCGCTTTCCGCGGTTTCTTGGCAAGAAGAGCGTTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAGGCTCTTGTGAGGGGCAGGCAGGTGAGGAAGCAGGCCGCCGTAACACTGAGGTGCATGCAGGCGTTGGTGCGCGTGCAGGCCAGAGTCCGTGCCCGGCGCGTGAGAATGTCCGTTGAAGGACAAGCTGTTCAGGAAATGCTTAACCAGAGACGCAGCAAAGCTGATATTCTGAAGCAAGCAGAGGAAGGGTGGTGTGATAGCAGAGGAACATTGCAAGATGTTAAAGCCAAAATTCAAATGCGCCAACAAGGTGCATTCAAGAGGGAGAGAGCCATTGCATACTCTCTTGCTCAAAAGCAATGGAGATCAACACCGAGTTCTAGTTCAAGAACAAACGCTTCCCTTAAGAATCTAGACATTGACAAATCTAACTGGGGTTGGAGTTGGTTGGAACGTTGGATGGCTGCTAAGCCATGGGAGAGTAGATTAATGGAGGAGTCTCAGGCTGAAATCTCGGATAAAACAACACAGCCTGCTAAGAAATTTGTGGACTCGTTTGGTGCAAATTCGAAACCATCAGAACCAAACATGGTGAAAGTCAAGAAGAACAATGTCACAACAAGGGTTTCTGCTAGGCCTCCCCAAATTATTGGACAAGCCACTCGTTCATCTTCAAGTCCAAGTTCTGAATTTCGGTATGACGAGAGTTCTGCATCATCTTCTATGTGCACATCCACAACACCAGTATCTGGTAACACTTGTGATAGAACAGAAGATAGCAGCAGCAGCAATAGGCCAAATTACATGAACTTGACAAAGTCAACAAAGGCAAAGCAAAGAAGTAGTAGCAATCAAGTGTATAATAGAGCTCAGAGGCAACAATCCATGGATGATTTTCAGTTCCTCAAAAGGGTAGGGATTTTGTCTAATTTGGATGCAAAGAGCACTGCTGGTTCTGACCATTCAATCAACTTTTCAAGGCCACTTAACTTGGACAAGAGCTCAGTGAAACCACGGTGA 1101 0.4741 MAAVVRAPPKDFRLVREEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQEMLNQRRSKADILKQAEEGWCDSRGTLQDVKAKIQMRQQGAFKRERAIAYSLAQKQWRSTPSSSSRTNASLKNLDIDKSNWGWSWLERWMAAKPWESRLMEESQAEISDKTTQPAKKFVDSFGANSKPSEPNMVKVKKNNVTTRVSARPPQIIGQATRSSSSPSSEFRYDESSASSSMCTSTTPVSGNTCDRTEDSSSSNRPNYMNLTKSTKAKQRSSSNQVYNRAQRQQSMDDFQFLKRVGILSNLDAKSTAGSDHSINFSRPLNLDKSSVKPR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2910 366 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 2 365 - -
Amo17g2910 366 SMART iq_5 39 60 IPR000048 GO:0005515
Amo17g2910 366 SMART iq_5 16 38 IPR000048 GO:0005515
Amo17g2910 366 MobiDBLite consensus disorder prediction 340 358 - -
Amo17g2910 366 Pfam Protein of unknown function (DUF4005) 264 312 IPR025064 -
Amo17g2910 366 Gene3D - 10 43 - -
Amo17g2910 366 Pfam IQ calmodulin-binding motif 19 38 IPR000048 GO:0005515
Amo17g2910 366 ProSiteProfiles IQ motif profile. 17 45 IPR000048 GO:0005515
Amo17g2910 366 PANTHER IQ-DOMAIN 5-RELATED 2 365 - -
Amo17g2910 366 ProSiteProfiles IQ motif profile. 41 68 IPR000048 GO:0005515
Amo17g2910 366 MobiDBLite consensus disorder prediction 340 366 - -
Amo17g2910 366 MobiDBLite consensus disorder prediction 210 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2910 Amo-Chr17 131272193 131274259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2910 1 366 IQD Protein Family AT2G26180 60.428 7.53e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2910 - - gsj:114408830 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0903 08 15664207 15666459 Amo17g2910 17 131272193 131274259 hybridization