Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2887 ATGGAGGACGCATTTGCCAGATCTATTCCCGAGGTCCTTGATCACTTTGGAGTCGACCCAACTAAAGGTCTATCAGATACCCAGGTAGTTCAACATGGTCGATTGTATGGTATAAACGTGCTGCCTGAAGATAAAAGAGCTCCMTTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTGAAGATACTTATAGCAGCTGCAGTGATATCATTTATTCTGGCTTTAGTTAATGGAGAAACGGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTATTGATATTAGCTGCAAATGCAGCTGTGGGGGTGATTACGGAAACAAATGCTGAAAAAGCTCTCGAGGAGCTGCGTGCCTATCAAGCTGATGTGGCAACTGTTTTGCGAAATGGTTGTTTTTCTATACTTCCAGCCACTGAACTTGTTCCTGGTGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGATGCTAAGTAGTCAAGTCCGTGTTGATCAAGCCATTCTTACAGGTGAGAGCAGCTCGGTGGAGAAAGAGCTTAAAACAACCACAACAACAAATGCTGTATACCAAGACAAGACAAATATTTTGTTCTCGGGAACGGTTATGGTTGCTGGTAGGGCAAGAGCTGTTGTAGTGGGAGTTGGTCCTAACACTGCCATGGGCAACATTCGTGATTCAATGATGCACACAGAGGATGAGGCGACACCATTGAAAAAGAAGCTGGATGAGTTTGGTACCTTTTTAGCCAAGGTTATTGCAGGGATTTGCGTATTGGTGTGGATTGTAAATATTGGTCATTTTCGTGACCCTGCTCATGGTGGTTTCTTGCGTGGTGCTATTCATTATTTTAAGATTGCAGTTGCCCTGGCAGTTGCAGCGATTCCTGAAGGGCTCCCAGCTGTTGTTACAACGTGTTTGGCTCTTGGTACAAAGCGTATGGCTAGGTTGAATGCCATCGTTCGGTCTTTGCCTTCTGTTGAAACCTTGGGTTGCACCACTGTAATTTGCAGCGACAAAACTGGAACACTAACTACTAATATGATGTCAGTTGCAAAGGTYTGCGTTGTTGAATCTGCACAACGTAGTCCTGCTGCTACTGAATACAGTGTCAGTGGGACAACATATGCACCTGAAGGCATAATTTTTGACAATACAGGGATGCAGATTGACTTTCCAGCTCAATTGCCGTGTCTTCTTCACATAGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTGCAGTATAATCCTGATAAGGGYAAGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTTGCAGAAAAGGTTGGTCTTCCTGGTTTTAATTCTATGCCATCAGCCTTGAACATGTTGAGTAACCATGAACGAGCTTCTTATTGTAACCATTATTGGGAGGAACAATTTAGAAAGATGGATGTGCTGGAATTTTCTCGAGATCGGAAAATGATGAGTGTGCTTTGCAGCAGAAACCAATTGAATGTTTTGTTCTCTAAAGGTGCTCCAGAAAGCATAATTGCTAGATGTACAACAATTCTGTGTAATGACGATGGCTCAATTGTGCCACTTACTGCTGATATTCGAGCAGAGCTGGCTTCAAGGTTCCATAGTTTTGCAGGAAAAGAAACATTGAGGTGCCTAGCTTTGGCTTTGAAATGGATGCCCTCAGGTCAACAGATGTTGTCCTTTGATGATGAGAGAGATCTTACATTTATTGGGTTGGTTGGGATGCTGGATCCACCAAGAGATGAAGTTAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTGTCACTGGAGATAACAAGTCCACCGCTGAGTCCCTTTGCCGCAAGATAGGCGCTTTTGACCATATGATAGAATTTTCCGAGCGCTCTTATACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAACAAACTCTAGCATTGCAACGCATGGCACTTTTTACCAGAGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCTTTGCAAAATCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTCAATGATGCACCCGCACTGAAAAAGGCAGATATAGGAATTGCTATGGGTTCTGGAACAGCTGTTGCCAAGAGTGCATCAGACATGGTGCTCGCTGATGACAACTTTGCTTCGATTGTTGCGGCTGTAGCAGAGGGTAGAGCTATATACAACAATACAAAACAGTTTATTAGATACATGATATCATCCAATATTGGTGAAGTAGTCTGTATATTTGTCGCTGCTGTGCTTGGGATACCTGATACTCTCGCTCCTGTCCAGCTGCTTTGGGTCAATTTGGTTACTGATGGACTGCCTGCAACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTGACAGGTTGGCTCTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCAACCGTTGCTGGTTTTATTTGGTGGTTTGTTTATGCTGATAGTGGCCCCAAACTACCATATGTTGAACTGATGAATTTTGACACTTGCCCAACAAGGGAGACAACTTATCCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTAAACAACCTTAGTGAAAATCAATCTCTTTTGGTCGTTCCTCCCTGGAGTAACATGTGGCTTGTTGCTTCTATAATCATAACTATGCTTCTTCACATACTAATTTTATATGTTCACCCGCTGTCAGTTCTTTTCTCTGTAACACCATTATCCTGGGATGACTGGATGGTTGTCTTTTATCTTTCAATACCTGTTATAATTATTGATGAAGTATTAAAGTTCTTCTCCAGAAATCCCATTGGTTTGAGGTTCAGATTGTGGTTTAGGAGGTCCGACCTACTTCCAAAAAGAGAAGTGCGTGATAAGTAA 3006 0.4245 MEDAFARSIPEVLDHFGVDPTKGLSDTQVVQHGRLYGINVLPEDKRAPFWKLVLKQFDDLLVKILIAAAVISFILALVNGETGLMAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSSQVRVDQAILTGESSSVEKELKTTTTTNAVYQDKTNILFSGTVMVAGRARAVVVGVGPNTAMGNIRDSMMHTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPAHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVESAQRSPAATEYSVSGTTYAPEGIIFDNTGMQIDFPAQLPCLLHIAMCSALCNESTLQYNPDKGKYEKIGESTEVALRVFAEKVGLPGFNSMPSALNMLSNHERASYCNHYWEEQFRKMDVLEFSRDRKMMSVLCSRNQLNVLFSKGAPESIIARCTTILCNDDGSIVPLTADIRAELASRFHSFAGKETLRCLALALKWMPSGQQMLSFDDERDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHMIEFSERSYTASEFEELPPLQQTLALQRMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYADSGPKLPYVELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVVPPWSNMWLVASIIITMLLHILILYVHPLSVLFSVTPLSWDDWMVVFYLSIPVIIIDEVLKFFSRNPIGLRFRLWFRRSDLLPKREVRDK* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2887 1001 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Amo17g2887 1001 PANTHER CALCIUM-TRANSPORTING ATPASE 4 979 - -
Amo17g2887 1001 Pfam haloacid dehalogenase-like hydrolase 584 705 - -
Amo17g2887 1001 Pfam Cation transporting ATPase, C-terminus 775 974 IPR006068 -
Amo17g2887 1001 Coils Coil 111 131 - -
Amo17g2887 1001 SUPERFAMILY HAD-like 578 739 IPR036412 -
Amo17g2887 1001 SFLD p-type atpase 326 743 IPR044492 -
Amo17g2887 1001 SFLD Haloacid Dehalogenase 326 743 - -
Amo17g2887 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 976 IPR023298 -
Amo17g2887 1001 Gene3D - 342 735 IPR023214 -
Amo17g2887 1001 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g2887 1001 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g2887 1001 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g2887 1001 Gene3D - 55 976 - -
Amo17g2887 1001 Pfam Cation transport ATPase (P-type) 415 524 - -
Amo17g2887 1001 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 4 979 - -
Amo17g2887 1001 Pfam E1-E2 ATPase 122 324 - -
Amo17g2887 1001 Pfam Cation transporter/ATPase, N-terminus 8 72 IPR004014 -
Amo17g2887 1001 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Amo17g2887 1001 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Amo17g2887 1001 CDD P-type_ATPase_SERCA 5 976 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Amo17g2887 1001 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Amo17g2887 1001 Gene3D - 22 237 - -
Amo17g2887 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 92 372 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g2887 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 662 776 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo17g2887 1001 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 53 848 IPR005782 GO:0005388|GO:0006816|GO:0016021
Amo17g2887 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Amo17g2887 1001 Gene3D - 355 592 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2887 Amo-Chr17 130981316 130996595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2887 1 1001 Primary Pumps ATPases(2) AT1G10130 84.016 0.0 1731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2887 K05853 - gmx:100783509 1846.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2887 17 130981316 130996595 Amo17g2887 17 130981316 130996595 ECH
Amo08g0846 08 14629792 14644891 Amo17g2887 17 130981316 130996595 hybridization