Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2879 ATGTCACTGAGTGGTAAACCCTGTCCTGAGATCAGAATTGAAGGAGAGAATTGCCCTCGTGCCGTGGTGGAATGGTACCAATGTTCTGCGTCAAAGGATCAAAGACACGATTTTGACCTGAGCTTGAAGGCGAAGAAACACCTCGTTTCGTTGGGTTGGATCTTTTCTTATTGCGACAAGAAAACTCGCTGGGAACTTCGTTACAAATCCCCTTCTGGTAAGACCTACATTTCTCTCAGAACTGCATGCAAAGCCTGCATTGAAGAGGAAAAGAAAGATTCTTCTTCATCTAGTTCCAATTCATTGCAAGGATCACAGCAATCTCAATCCCAATCTCTACCTGCTGCATCACCGTCTTCTGATCAACAACCAACGAGTTCCAAGGTTACCGGTGGTAGGCCTCGGAGACGCAAGAAACCGAGTGACGATGAAGATTGGACTCTTTCGTCTCATCAAGTATCCAATTTAGTAAGTCCTCGTTCTAGTTCTCGTGGCGGTGGCGGTGGCGGTGGCGGTCGTCGTCGTGATTCTGGTGAAATTCCTAATGCCGCAAGAAAAGTAAGAAGGGAACGGAGTTCTTCTGATAATGGTAATTTGCCGGCGTTTCGGAATCCAAGAACGATTCTTTCTTGGCTGATTGACAACAATGTGGTGGCGCAGGAGGCGTGGGTTTTCTGCTGTGGAGGGAAAGATAATGAATTCGTGAAGAGAGGGAAGCTGCTTCGTTCTGGTATTGTCTGCCATTGTTGTGAATCTTTGCTTACACTCTCTCAATTCGAGGTTCATGCCGGTTGCAATGGTCAACCTCCCTCTGCTAGTATCTTCTTGGAACAAGATAAAAGGTCTTTGTTGGATTGCCAGAAACAAGCATTGATGATGATCGAGGCTAACAACAATGGGGATAATGATCATCATCATGAAAATGATTCCATTTGTTCAATTTGTCTCAAGGGGGGTTTCATTCTTCTCTGTGATCGCTGTCCGGCTTCATTCCATGCCGAATGTATTGGCCTTGATCATGTTCCCCCTGGTGATTGGTTCTGCCCTTCATGCTCTTGCAGAATTTGCAACCGTCCCAAATGCAGAGAAGATTCTTCTAGAGAGGAAAGTCATTTGGCTAACAATTTTATAGCTTGTTTTCAGTGTCAACGCAGATTCCACCTTGGATGTTTAGCTTCTAGAGGCTTTGCTTTTCTGAACATGGAAACTGATTGTAATAAGCTTTGGTTTTGCAATGAAGCTTGTCAGAAGATATTTTTTACACTGAATAACATGTTGGGAAAACCAATTCTTGTGGGTGATGGTAATCTAACTTGGACCTTGTTGACCAGCATCAAGAAAAGCACTAATGACAATGATGACAATGGAAGCATTACTGAAATGGAGAGCAAGCTAAATGTTGCACTTGGAGTAATTCATGAGTGTTTTGAGCCCATCATAGATCCTGTATTTGGAAGAGACATTGCTGCAGATATTATGTTCAGCAGATATTCATGGCTGCCACGTATGAACTTTACAGGGTTCTACACTGTGATTCTAGAGAGGAATGATGAGGTGATCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGGTTGCAGAAGTGCCGCTTGTCGCCACGAGGGACCAGTATCGAAATCAGGGAATGTGTCGAATTCTGATGGGTCAGCTTCAGAAGCTGTTGGTTAAGTTGGGTGTTGAGAGGTTGCTATTGCCTGCTGCTCCTTATTTAATAGAAACTTGGACAAACTCATTTGGATTTGCAAAAATGACACACTCAGATCAGTATTACTATGTAGGTTATCCTCTTGCAAATTTTCCAGACACAACATTGTGCCACAAATCATTGAAGCAACCTTTGATGCTGTATGAGGTCTAA 1878 0.4345 MSLSGKPCPEIRIEGENCPRAVVEWYQCSASKDQRHDFDLSLKAKKHLVSLGWIFSYCDKKTRWELRYKSPSGKTYISLRTACKACIEEEKKDSSSSSSNSLQGSQQSQSQSLPAASPSSDQQPTSSKVTGGRPRRRKKPSDDEDWTLSSHQVSNLVSPRSSSRGGGGGGGGRRRDSGEIPNAARKVRRERSSSDNGNLPAFRNPRTILSWLIDNNVVAQEAWVFCCGGKDNEFVKRGKLLRSGIVCHCCESLLTLSQFEVHAGCNGQPPSASIFLEQDKRSLLDCQKQALMMIEANNNGDNDHHHENDSICSICLKGGFILLCDRCPASFHAECIGLDHVPPGDWFCPSCSCRICNRPKCREDSSREESHLANNFIACFQCQRRFHLGCLASRGFAFLNMETDCNKLWFCNEACQKIFFTLNNMLGKPILVGDGNLTWTLLTSIKKSTNDNDDNGSITEMESKLNVALGVIHECFEPIIDPVFGRDIAADIMFSRYSWLPRMNFTGFYTVILERNDEVISVANTRIYGQKVAEVPLVATRDQYRNQGMCRILMGQLQKLLVKLGVERLLLPAAPYLIETWTNSFGFAKMTHSDQYYYVGYPLANFPDTTLCHKSLKQPLMLYEV* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2879 625 Gene3D - 459 620 - -
Amo17g2879 625 MobiDBLite consensus disorder prediction 94 200 - -
Amo17g2879 625 MobiDBLite consensus disorder prediction 178 193 - -
Amo17g2879 625 SMART PHD_3 353 415 IPR001965 -
Amo17g2879 625 SMART PHD_3 311 352 IPR001965 -
Amo17g2879 625 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 492 604 IPR016181 -
Amo17g2879 625 MobiDBLite consensus disorder prediction 96 130 - -
Amo17g2879 625 SUPERFAMILY FYVE/PHD zinc finger 288 353 IPR011011 -
Amo17g2879 625 Pfam PHD-finger 311 353 IPR019787 -
Amo17g2879 625 ProSiteProfiles Zinc finger PHD-type profile. 309 354 IPR019787 -
Amo17g2879 625 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 456 608 IPR000182 GO:0016407
Amo17g2879 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 376 IPR013083 -
Amo17g2879 625 CDD NAT_SF 511 571 - -
Amo17g2879 625 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 619 - -
Amo17g2879 625 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 619 - -
Amo17g2879 625 Pfam Tify domain binding domain 238 290 IPR032308 -
Amo17g2879 625 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2879 Amo-Chr17 130910060 130911937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2879 40 561 PHD Transcription Factor Family AT5G58610 34.017 1.15e-94 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo17g2879 TDBD 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2879 - - aip:107608518 1234.94