Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2868 ATGGAAGCTGTTGGTGTTGGAGCCTTCCCTGAAGGAGAATGGGATTGCATTTACAGAATATTTTCAATTGAAGAAGATGGGAACACAGAAATTGAATCCATGTTTTCTCCCACCCCTAATTTGCAGTATATTTGTCAAGAGAGTAGTAATAGCATATTTGATAATGATTTTCACTTTCACATGATGATGATGATGATGATGGATAATGAGAAAAACCATGATGGGGTTTTTGTTCCTTCTATTATGGAAGAACATGTCACAATGAATGAAGATGATAAGACAAGTGAAAATCCTGAATTGCCACTAGATAACAAGAAAAAGGTTCGTGTTTCAAAAGATAGTTTGGAAATTCATCAGAGGAAGGATAATGAAGTAGGGAACAAGAAGAAGCAGAAGGTGGAGAGTAATGGGAAAGAAATAGAAGAAAATAATGCAGAATCAGATGGACTTGGCACTACTGATAATTATACCGCTTTAGAAGATGATAATGGCACTAATAATGATAATAAGGAGGAGAATAGTGGAGGAGCTACTTCTTCAGCATTGAACTCAAATGGGAAGACAAGAGTTACTAGAGGATCAGCAACAGATCCTCAAAGCCTTTATGCAAGGAGGAGAAGAGAGAGGATTAATGAGAGACTAAGAACTCTACAGAGTCTTGTTCCCAATGGAACAAAGGTTGATATAAGCACAATGCTAAAAGAAGCAGTGCATTACGTGAAATTTTTGCAGCTACAGATCAAGCTTTTGAGCTCTGATGATTTGTGGATGTACGCTCCGATAGCTTATAATGGATTTGACATTGGACTCATCAATCTATCTCCTCAACAACATTAA 837 0.3704 MEAVGVGAFPEGEWDCIYRIFSIEEDGNTEIESMFSPTPNLQYICQESSNSIFDNDFHFHMMMMMMMDNEKNHDGVFVPSIMEEHVTMNEDDKTSENPELPLDNKKKVRVSKDSLEIHQRKDNEVGNKKKQKVESNGKEIEENNAESDGLGTTDNYTALEDDNGTNNDNKEENSGGATSSALNSNGKTRVTRGSATDPQSLYARRRRERINERLRTLQSLVPNGTKVDISTMLKEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGFDIGLINLSPQQH* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2868 278 Gene3D - 194 251 IPR036638 GO:0046983
Amo17g2868 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Amo17g2868 278 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 28 268 - -
Amo17g2868 278 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 268 - -
Amo17g2868 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 260 IPR036638 GO:0046983
Amo17g2868 278 MobiDBLite consensus disorder prediction 146 198 - -
Amo17g2868 278 Pfam Helix-loop-helix DNA-binding domain 204 244 IPR011598 GO:0046983
Amo17g2868 278 MobiDBLite consensus disorder prediction 88 202 - -
Amo17g2868 278 MobiDBLite consensus disorder prediction 88 145 - -
Amo17g2868 278 SMART finulus 200 249 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2868 Amo-Chr17 130758433 130761212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2868 103 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 57.225 3.63e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g2868 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2868 - - aip:107607960 521.161