Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2849 ATGGAGAGAGTGCAGGTTCCCATAAAGAAGATTGAGAACATAACAAACAGGCAAATTACATTCTCTAAGAGGAGGAATGACCTCGTCAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGTGATGTTGATGTTGCTCTCATCACGTTCTTCCCTTATGGCAGACCTGCTCTCTTCTCTTCCAGCACAAAAGCGATATATTAATCTTCCACCACAAGAATGCCAAAAGAATGCCCTCGTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGTTGATATTGCTCTCATGACATTCTCCCCTTCTAATAGACTCGCTCTCTTCTCTTCTAGCACAAGAGTGAAGGTTCCCATCAAGAAGATTAAGAACATAACAAACAGGCAAATTACATTCTCTAAAAGGAGGAATGGTCTCATCAAGACAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCACCTTCTCCCCTTCTGACAGTCCAGCTCTCTTCTTTTCCAGCACAAGGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAAAACAATGTGTCTTGGAGGAAGAGTTTAATTTTAGTGTATCTAATCAACAGGTGGTTCTTGCAAACACGGTAGATGTAGATGGATTATTTGTTGGCGGGACATCAAATAATTCAGTAGAGGATCAACAATCACATAGTGCTGTTGTTGACATGTTAAGCACAAGTTCTACCCTTGTGCCTTCTACAAACACCTTTCAACTTCAAATGAATCCAGAGAATAATAGTTTAGAAGTCTGCACACTCTCTCCTGAGTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAATTCCATGATTTAGCTGGCGCATTACTCACTATTATTGCCATCACTAAGCAAAGTAAAAGAATAAAGGTGATAGATATGGGGAGAGTGAAGCTTCCCATTAAGAAGATTGAGAACATAACAAATAGGCAAATTACATTCTCTAAAAGGAGAAATAGTCTCATCAAGAAAGCTTACGAGCTTTCTGTTCTCTGTGATGTTGATGTTGCTCTCATCACGTTCTCTCCTTCTGGCAGACCAGCTCTCTTCTCTTCCAGCACAAGCTTTGATGAAATTCTAGAGCGATATATTAATCTTCCACCACAAGAACACCAAAAGATATTTGAAGGTGATCCATGTGAGATCACTACACTTTGTGAGGCTGAATATCGTCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGAGTGTCTTAGAAGAAGAGTTTAATTTTGGTGTATCTGATCAACAGGTGAATCTTGCAAACACGGTAGATGTAGATGGATTATTTGTTGGCGGGACATCAAATAATCCAGTAGAGGGTCAACAATCACATAGTGCTGTTGTTGACATGTTAGGCACAAGTTCTACCCTTGTGCCTTCTACAAACACCCTTCAACTTCAAATGAATCCAGATAATAATAGTTTAGAAGTCTGCACACTATCTCCTGACTTTGGACAAGTTATAGATATCAATGGTTCCTCTTGGGAGCAACTCCATGATTTAGGGAATGGATCTTTGTCAATAGCAGAGGCAAGGGAGCAAGAACAACTAATTGAACAATATCTGTCTCAATTTCCTTCTTCAGATATCTTAATATCCGATCAACATCATCAAATATGA 1719 0.395 MERVQVPIKKIENITNRQITFSKRRNDLVKKAYELSVLCDVMLMLLSSRSSLMADLLSSLPAQKRYINLPPQECQKNALVKKAYELSVLCDVDIALMTFSPSNRLALFSSSTRVKVPIKKIKNITNRQITFSKRRNGLIKTAYELSVLCDVDVALITFSPSDSPALFFSSTRIFEGDPCEITTLCEAEYRQHILQQTLKQCVLEEEFNFSVSNQQVVLANTVDVDGLFVGGTSNNSVEDQQSHSAVVDMLSTSSTLVPSTNTFQLQMNPENNSLEVCTLSPEFGQVIDINGSSWEQFHDLAGALLTIIAITKQSKRIKVIDMGRVKLPIKKIENITNRQITFSKRRNSLIKKAYELSVLCDVDVALITFSPSGRPALFSSSTSFDEILERYINLPPQEHQKIFEGDPCEITTLCEAEYRQHILQQTLEQVQLRKSVLEEEFNFGVSDQQVNLANTVDVDGLFVGGTSNNPVEGQQSHSAVVDMLGTSSTLVPSTNTLQLQMNPDNNSLEVCTLSPDFGQVIDINGSSWEQLHDLGNGSLSIAEAREQEQLIEQYLSQFPSSDILISDQHHQI* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2849 572 Gene3D - 335 405 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 CDD MADS 112 170 - -
Amo17g2849 572 ProSiteProfiles MADS-box domain profile. 322 382 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 322 395 - -
Amo17g2849 572 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 120 164 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 45 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 76 105 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 331 375 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PRINTS MADS domain signature 344 359 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PRINTS MADS domain signature 324 344 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PRINTS MADS domain signature 359 380 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 76 111 - -
Amo17g2849 572 SUPERFAMILY SRF-like 323 401 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 Gene3D - 74 125 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 ProSiteProfiles MADS-box domain profile. 75 112 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 ProSiteProfiles MADS-box domain profile. 111 171 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS BOX PROTEIN 112 167 - -
Amo17g2849 572 PANTHER MADS BOX PROTEIN 168 256 - -
Amo17g2849 572 PANTHER MADS BOX PROTEIN 398 477 - -
Amo17g2849 572 PANTHER MADS BOX PROTEIN 322 395 - -
Amo17g2849 572 Gene3D - 126 199 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 Gene3D - 13 56 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 SUPERFAMILY SRF-like 1 50 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 42 - -
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 168 256 - -
Amo17g2849 572 CDD MADS_MEF2_like 323 393 IPR033896 GO:0000977|GO:0045944
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 112 167 - -
Amo17g2849 572 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 398 477 - -
Amo17g2849 572 Coils Coil 420 440 - -
Amo17g2849 572 SUPERFAMILY SRF-like 112 171 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 SMART madsneu2 322 381 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 SMART madsneu2 112 170 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 SMART madsneu2 60 111 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS BOX PROTEIN 76 111 - -
Amo17g2849 572 SUPERFAMILY SRF-like 76 112 IPR036879 GO:0003677|GO:0046983
Amo17g2849 572 PANTHER MADS BOX PROTEIN 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2849 Amo-Chr17 130547116 130570246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2849 322 400 Type I MADS-box Gene Family AT1G22130 68.354 1.39e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo17g2849 SRF-TF 7.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2849 - - adu:107461111 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2849 17 130547116 130570246 Amo17g2849 17 130547116 130570246 ECH
Amo08g0763 08 13412749 13416359 Amo17g2849 17 130547116 130570246 hybridization