Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2848 ATGGCGCTCTTCATGCTTCATCCTTATTATGCTATAAATCCCAGTTGTCTCTTTCAATATCCCTCCCTTCAAACTTGGCACCCTCTTCCTCTCTTCTCTGCTCCTTATTACCCTCTCGCTTTCTCTGTCCCCTTTCTTCAACGAGAGCCACCTTCAGAGATGGAGACTCGTGCCGCCGCAAAGAGGAGGGCCATCACCGCAAACCTCACTGAGACTCAACCCCTCAAGAGGAAGCGCGTTGTGTTGGGTGACATTACCAATTTTCCTACTGAAATTTTGGATACTCGGAAACCAAAATACAAATGCCTCAACAATGCCAAGCCCAAGAAAGCTTCTGTCACCGACAAGAACATGAAGGTTGTGAAGGTTAAGGTGGAGAAGGAGAAAGAGAATGTGCTTGATGATGAAGATGACAAGCTCAATGTTGACCCTGTTGCCTCTGATATCTATGTGTACCTTCGGAAGATGGAGTTGGAGATGAATAGAAGACCGAGAGTTGATTATCTTGAGAGGATTCAGAAAGATGTAACTGCAAACATGAGAGGGATTTTGGTGGATTGGTTAGTGGAAGTTGCAGAGGAATACAAGCTTCTCTCTGACACACTATATCTTTCAATTTCTTACATTGATAGGTATCTCTCCATGAATCGTGTCACCAAGCCTTATCTTCAGTTGCTCGGTGTTTCATCAATGCTCATTGCTGCGAAATATGAAGAAATTAATCCTCCTCATGTGGAGGAGTTCTGCTTTATCACTGATAACACATACAAGAAATCAGAGGTAGTGGAAATGGAAGCTAACATACTGAAGTCTTTGAATTTTGAAATGGGTAGCCCAACTATTAAGACCTTTTTAAGGAGGTTTAATGAGATTGCTTGTGAGAGTCAAAAGGGTCAAAAGTTGCAGTTTGAGTTTCTGTGTTATTACCTTGCTGAACTAAGCTTGTTGGAATATGGATGTTTGAAGTTCTTGCCTTCTTTGGTGGCTGCTGCTGTTATATTTCTTGCTAGATTTATCATATCACCTGAATCAAACCCCTGGACTTTAACCCTTTATGACCGCACTGGATACAATTCACTTCAGTTGAAAGAATGTGTTCTGATCTTACATGACTTGTATTTGGTAAGAAGGGGAGCATGCTTCCAAGCTATTAGGAAGAAATACAAGCAGCATAAGTTCAAGTATGTGGCAAATATTCCTTCCCCTCCTCAGATACCGAATTCAAGCTTTGAAGATGACTTTTATGAAGAAAACTTTTATGAGTAA 1266 0.4131 MALFMLHPYYAINPSCLFQYPSLQTWHPLPLFSAPYYPLAFSVPFLQREPPSEMETRAAAKRRAITANLTETQPLKRKRVVLGDITNFPTEILDTRKPKYKCLNNAKPKKASVTDKNMKVVKVKVEKEKENVLDDEDDKLNVDPVASDIYVYLRKMELEMNRRPRVDYLERIQKDVTANMRGILVDWLVEVAEEYKLLSDTLYLSISYIDRYLSMNRVTKPYLQLLGVSSMLIAAKYEEINPPHVEEFCFITDNTYKKSEVVEMEANILKSLNFEMGSPTIKTFLRRFNEIACESQKGQKLQFEFLCYYLAELSLLEYGCLKFLPSLVAAAVIFLARFIISPESNPWTLTLYDRTGYNSLQLKECVLILHDLYLVRRGACFQAIRKKYKQHKFKYVANIPSPPQIPNSSFEDDFYEENFYE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2848 421 Gene3D - 148 398 - -
Amo17g2848 421 CDD CYCLIN 279 370 IPR013763 -
Amo17g2848 421 SUPERFAMILY Cyclin-like 137 276 IPR036915 -
Amo17g2848 421 Pfam Cyclin, N-terminal domain 148 276 IPR006671 -
Amo17g2848 421 SUPERFAMILY Cyclin-like 279 404 IPR036915 -
Amo17g2848 421 Pfam Cyclin, C-terminal domain 279 401 IPR004367 -
Amo17g2848 421 CDD CYCLIN 180 269 IPR013763 -
Amo17g2848 421 PANTHER CYCLIN-A3-1-RELATED 70 413 - -
Amo17g2848 421 Gene3D - 164 277 - -
Amo17g2848 421 PANTHER CYCLINS 70 413 IPR039361 -
Amo17g2848 421 SMART cyclin_7 186 270 IPR013763 -
Amo17g2848 421 SMART cyclin_7 283 371 IPR013763 -
Amo17g2848 421 ProSitePatterns Cyclins signature. 181 212 IPR006671 -
Amo17g2848 421 SMART Cyclin_C_2 279 402 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2848 Amo-Chr17 130544529 130546658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2848 56 412 Core Cell Cycle Gene Families AT5G43080 52.381 6.93e-126 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2848 K06627 - pop:7472680 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2848 17 130544529 130546658 Amo17g2848 17 130544529 130546658 ECH
Amo08g0812 08 14278658 14280207 Amo17g2848 17 130544529 130546658 hybridization