Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2843 ATGGCTATCATCAATATATCAACATTAATATTTTTTCTCCTATTGTCGATAAAGCTTTCATGTTCAACAAGAAACCATAGCATTCTAATCCAAGGTTCATCAATGTCAGTAGATGAACCAAACGACGTTATAGTGTCACCCAAGGGCACGTTTTCTGCTGGCTTCTACGCGATTGGCGAAAACGCTTATTGCTTTGGCGTTTGGTTTTCCCGAAACCCTACTCTTGTATGGATGGCAAATCGTGACGACCCAGTCAACGGAAAGAAATCAAAGCTCTCCCTACTCGCCAATGGTAACCTTGTTCTAGTGGATGCCGATAATTCCCATGTTTGGTCAACAGACACAGTTTCATCGCCGTCTTCTACCGTGCATTTGGTTCTGTATGACACCGGCAACCTTGTTCTAACGGAGGAGATGAACAGCACCGTGTTGTGGCAAAGCTTTGATTTCCCTACGGATACTCTTCTTCCTGAGCAAGTGTTCGCCCGATTCACCAAAGTAATCTCTTCGAAAAGTCAGACAAACAAGTCCACTGGTTTGTACACGTTGTTTTTCGACAACGATAACGTTCTTCGTCTTGTTTACAATGGCCCCGAAGTTTCAGGGATCTACTGGCCAGATCCTTGGAATCTGAACTGGGCCAACTTCAGGAGTAGTTACAACAGCAGCAGAGTTGCTGTCTTGGACACTCTTGGCACCTTCATTTCCTCAGATAATTTCACTTTCACCACTTCCGATCACGGTTCCGTCATCCAGCGAAGGTTGACCCTTGATCCTAATGGAAACCTTCGTGTTTATAGCCGTAGCAGTGATCAAGATGACTGGTATGTTTCGTGGCAAGCATATGCAAGACCATGCAGGATCCATGGCGTTTGTGGGCCCAATAGTTTGTGCACTTACCATACTGATTCTGCCATTAAATGCTCTTGCCTTCCCGGTCATAAGATGAAGTATTCAAATGATTGGTCTTACGGCTGCGAACCCAGATTTTCTGTATCTTGCAAGAACAATGAAAGTGGGTCGTCGTCACAGTTCTTATCTATAAGCAACGTGGAGTTGTATGGCTATGATTATGGACTCATGACAAATTACACATTAGATCAGTGTAAGGAGTTCTGCCTCCAACTATGCGATTGCAAAGGCGTTCAGTACACTTATAACAAGGCCTCTGGTACCAACAATTGTTATGTCAAGGTTCAGTTGCGGAATGCATATCGAATCCCATATTTTAATGCTGAATTTCTTTTGAAACTGCCGGTCAATAGTACCTATTCTTTTCAAGATGATCAAGTTTCAATCGTTGATAGACACAACAATCTTGATTGTCCTGTGGGTGCAGAAACAATACAACTTGAGAGGATTTATATCAAAGGGCAGGTGAGCAGATATGTTAAGTTCTTGTTATGGTTCGCTGGAGGAGTTGGGATATTTGAAATGCTGTGCATATTTGTGGTTTGGTACTTTTTGGTAAGGTTTAGGGTGCATTCTGGTGCAGATGAACGAGTGTATGACTTAGGCTTTGCAGGGTTTAGGAGATTCAGTTACTCTGAACTGAAACAAGCCACCAAAGGGTTTAGCCAAGAGATTGGAAAGGGTGCATGGGGGATTGTATACAAAGGTGTACTCTCTGATGGAAGAGTGGTGGCCGTGAAGAGACTCATGGAAGCGAATCAAGGAGAAGAGGAGTTCCTTGCTGAAGTGAGCAGCATTGGAAGGCTCAATCACATGAACTTGATTGAGATGTGGGGATACTGTGCTGAAGGGAAACACAGGCTCCTGGTTTATGAGCACATGGAGCATGGTTCTCTTGCTCAGAATCTTAGGACAAATAGATTGGATTGGTCCAAAAGGTTTGAGATTGCGTTGGGTACAGCCAAAGGTTTGTCTTATCTTCATGATGAGTGTTTGGATTGGATTTTGCATTGTGATGTAAAGCCACAGAACATTCTTCTTGATTCTAATTTTCAACCAAAGGTAGCTGATTTTGGATTGTCCAAGTTGCTTAAAAGAAGTGACACTAATAAGTACTCTAGCTTTTCCAAGATACGAGGAACAAGAGGATACATGGCTCCTGAGTGGGTTTTGAACCTCCCAATAACCTCCAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAAATGTTCACTGGAAAGAGCGCAACCAAGAACCTTGGGATTAGTAGTGATGGAGTAGAGAATAATCAACATATGTACCTGGTTGCATGGCTGAGAGAGAAACAGAATATGGGATTTCGTTGTGGTTGGGTTAGTGAAATCTTAGACCCCACCATAGAAGGTGATTATGATGAAAATAAGTTGGAAGCTTTGGCTAGAGTTGCTTTGCAATGTGTAGAGGATGAGAGGGACAAAAGACCCACCATGAGCCAAGTGGTAGAGATGCTTCAGAAATATTTATAA 2421 0.4275 MAIINISTLIFFLLLSIKLSCSTRNHSILIQGSSMSVDEPNDVIVSPKGTFSAGFYAIGENAYCFGVWFSRNPTLVWMANRDDPVNGKKSKLSLLANGNLVLVDADNSHVWSTDTVSSPSSTVHLVLYDTGNLVLTEEMNSTVLWQSFDFPTDTLLPEQVFARFTKVISSKSQTNKSTGLYTLFFDNDNVLRLVYNGPEVSGIYWPDPWNLNWANFRSSYNSSRVAVLDTLGTFISSDNFTFTTSDHGSVIQRRLTLDPNGNLRVYSRSSDQDDWYVSWQAYARPCRIHGVCGPNSLCTYHTDSAIKCSCLPGHKMKYSNDWSYGCEPRFSVSCKNNESGSSSQFLSISNVELYGYDYGLMTNYTLDQCKEFCLQLCDCKGVQYTYNKASGTNNCYVKVQLRNAYRIPYFNAEFLLKLPVNSTYSFQDDQVSIVDRHNNLDCPVGAETIQLERIYIKGQVSRYVKFLLWFAGGVGIFEMLCIFVVWYFLVRFRVHSGADERVYDLGFAGFRRFSYSELKQATKGFSQEIGKGAWGIVYKGVLSDGRVVAVKRLMEANQGEEEFLAEVSSIGRLNHMNLIEMWGYCAEGKHRLLVYEHMEHGSLAQNLRTNRLDWSKRFEIALGTAKGLSYLHDECLDWILHCDVKPQNILLDSNFQPKVADFGLSKLLKRSDTNKYSSFSKIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLEMFTGKSATKNLGISSDGVENNQHMYLVAWLREKQNMGFRCGWVSEILDPTIEGDYDENKLEALARVALQCVEDERDKRPTMSQVVEMLQKYL* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2843 806 SMART serkin_6 523 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2843 806 SUPERFAMILY Protein kinase-like (PK-like) 506 802 IPR011009 -
Amo17g2843 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Amo17g2843 806 CDD PAN_AP_plant 330 419 - -
Amo17g2843 806 CDD STKc_IRAK 529 804 - -
Amo17g2843 806 Gene3D Transferase(Phosphotransferase) domain 1 598 806 - -
Amo17g2843 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Amo17g2843 806 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Amo17g2843 806 ProSiteProfiles Protein kinase domain profile. 523 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2843 806 Pfam S-locus glycoprotein domain 215 317 IPR000858 GO:0048544
Amo17g2843 806 Gene3D - 24 148 IPR036426 -
Amo17g2843 806 CDD B_lectin 44 151 IPR001480 -
Amo17g2843 806 Pfam Protein kinase domain 526 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2843 806 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 5 804 - -
Amo17g2843 806 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Amo17g2843 806 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Amo17g2843 806 SMART ntp_6 340 418 IPR003609 -
Amo17g2843 806 Pfam PAN-like domain 340 399 IPR003609 -
Amo17g2843 806 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 804 - -
Amo17g2843 806 ProSiteProfiles PAN/Apple domain profile. 334 414 IPR003609 -
Amo17g2843 806 Pfam D-mannose binding lectin 74 162 IPR001480 -
Amo17g2843 806 SMART blect_4 35 151 IPR001480 -
Amo17g2843 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 208 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2843 Amo-Chr17 130467692 130470363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2843 491 802 Receptor kinase-like Gene Family AT3G58690 40.606 1.50e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo17g2843 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2843 - - gmx:100792388 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2843 17 130467692 130470363 Amo17g2843 17 130467692 130470363 ECH