Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2837 ATGACCAATATAACCTTATCACAACTGCTTCTCTCACTGTTACTGTTGTTGTTGTGGAATAATGCATCTTGTTTACTGCCTCCTCAAGATGCCGTCTCCCTAATGGCATTCAAGTCCAAAGCCGATCTCAATAACCGTCTCAACTTCGCCAACACCAGCGCCGCCGCACAACACCGCTTCTGCCACTGGCAAGGAGTCCAATGCGCCGCAAACAGAGTGGTCCGCCTCGTCATCCAGGACTTGGATCTCGGTGGCGTCTTCGCTCCGGACACACTGTCAAAGCTGGACCAGCTCCGGGTGCTGAGCCTTCACAATAACTCCCTAACCGGACCCATACCGGACCTCTCAGGTCTCACAAACCTCAAGAGTCTCTTTCTCCACAACAACCGTTTCAACGGTTCTCTCCCTCTTTCACTCTTCTCCCTCCACAGGCTCCGAACCTTGGATTTCTCCCACAACAACCTCTCCGGTCACATTCCAATTGCATTCACCAAACTCGACCGCCTCTACTCCCTTCGCTTGAGTTGGAACCACTTCAACGGTACCGTTCCTCCTTTCAACCAGTCTTCTCTCAAAACGTTTGACGTTTCCTGCAACAACCTCACCGGCGCCGTTCCCCTCACACCTACATTGTTCCGTTTTGATGCTTCCTCTTTCTCTTTCAACCCGGGACTCTGCGGCGAAATCATCCACAAGGAATGCCATCCGAGTACGCCGTTTTTCGGCCCCATAGCGGTGTCTTCGCCTCCGCCAGCAGTGGTTCTCGGCCAGAGCACGGAAGTTCACGGCGTTAATGGCATTTTCCGGCAGCCATACGAGAAGAAGCGAGACAGGACGGCAGTGATTGTGGGATTCTCCGCGGGAGTGGTTGTTCTCGTGGCATCGTTGGTGTGCTTCGCGGTGGCCGTGAGGAGGCAGAGGAGGAGCAGCGGAGGAGAAGAGAACAAGAAGGAAGGAGCAATCAGGTCAGGGTACATGGGATCGGATGCGGCGGCGACGGCGGAGGCAGCGGCGGCAATGCAGGTGGAGCAAGAAAGAGAGCTGGAGGAGAAGGTGAGGAGGGCACAGGTAGTGGCGAAGAGTGGGAGTTTAGTATTCTGTGCGGGGGAGGCGCAGGTGTACACGCTGGAGCAGCTGATGAAGGGTTCTGCGGAGCTTTTAGGGAGAGGATGTTTGGGCACGACTTACAAGGCGGTTCTTGATAACCGTCTGATCGTTACGGTTAAGAGGCTTGATGCTGGGAAGATGGGTGCACATGCAACAAAGGAGGTTTTCGAGCGACACATGGAATCAGTGGGTGGCCTTCGCCATCCCAATTTGGTTCCTGTAAGGGCTTATTTTCAGGCCAAGGATGAGAGGCTCGTTATCTACGATTACCAACCCAATGGCAGCCTCTTCTCCCTCATTCACGGTTCTAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCGTGCTTAAAAATAGCAGAAGACGTAGCACAGGGTTTGTCGTACATCCACCAAGCATGGAGATTGGTTCACGGCAATCTCAAATCCTCCAATGTTATCCTTGGCCCTGATTTCGAGGCCTGCATCACGGACTATTGCCTCACCATTCTGGCCAACCCATCAGACTTGCATGAAGATGCTGATTCCGCCGCCTACAGGGCTCCGGAGACTCGCAATCCCAAGCACCATCACCAACCAACACCCAAATCAGACGTTTATTCATATGGGGTTCTGCTCATGGAGCTTCTCACTGGGAAATCTCCCTCTGAGGTACCATTCTTGGTTCCGAGCGATATGTTGAGTTGGGTGAGGTCCATAAGGGATGACAATGGTGGTGATGATAGTAGAATGGACATGCTTCTTCAGGTGGCTACGACTTGTAGCTTGACCTCGCCGGAGCAGAGACCCACCATGTGGCAAGTCTTAAAGATGTTGCAGGAGATCAAGGAGATTGTATTATTGGAGAATAATACTGAATTGGACTTGCGGCAGTAG 1983 0.528 MTNITLSQLLLSLLLLLLWNNASCLLPPQDAVSLMAFKSKADLNNRLNFANTSAAAQHRFCHWQGVQCAANRVVRLVIQDLDLGGVFAPDTLSKLDQLRVLSLHNNSLTGPIPDLSGLTNLKSLFLHNNRFNGSLPLSLFSLHRLRTLDFSHNNLSGHIPIAFTKLDRLYSLRLSWNHFNGTVPPFNQSSLKTFDVSCNNLTGAVPLTPTLFRFDASSFSFNPGLCGEIIHKECHPSTPFFGPIAVSSPPPAVVLGQSTEVHGVNGIFRQPYEKKRDRTAVIVGFSAGVVVLVASLVCFAVAVRRQRRSSGGEENKKEGAIRSGYMGSDAAATAEAAAAMQVEQERELEEKVRRAQVVAKSGSLVFCAGEAQVYTLEQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDAGKMGAHATKEVFERHMESVGGLRHPNLVPVRAYFQAKDERLVIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVILGPDFEACITDYCLTILANPSDLHEDADSAAYRAPETRNPKHHHQPTPKSDVYSYGVLLMELLTGKSPSEVPFLVPSDMLSWVRSIRDDNGGDDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLENNTELDLRQ* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2837 660 Gene3D Phosphorylase Kinase; domain 1 349 459 - -
Amo17g2837 660 Pfam Protein kinase domain 385 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2837 660 SUPERFAMILY L domain-like 50 226 - -
Amo17g2837 660 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Amo17g2837 660 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 653 - -
Amo17g2837 660 Coils Coil 656 660 - -
Amo17g2837 660 Gene3D Transferase(Phosphotransferase) domain 1 461 656 - -
Amo17g2837 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 653 - -
Amo17g2837 660 ProSiteProfiles Protein kinase domain profile. 381 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2837 660 Gene3D Ribonuclease Inhibitor 30 139 IPR032675 -
Amo17g2837 660 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Amo17g2837 660 SUPERFAMILY Protein kinase-like (PK-like) 385 642 IPR011009 -
Amo17g2837 660 Gene3D Ribonuclease Inhibitor 140 227 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2837 Amo-Chr17 130354932 130358467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2837 29 651 Receptor kinase-like Gene Family AT5G43020 59.055 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo17g2837 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2837 - - gmx:100817172 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2837 17 130354932 130358467 Amo17g2837 17 130354932 130358467 ECH