Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2834 ATGGAAGAGAAATTTGATTTAGTAACTGATGTGAATCCAAAAAAGCTTCAATCGCATTTCAAAGTGTATGTTGTTAGGATATGGGAGGTTCCAAGCAAATACAATGAGAAAGAGATTGCGTCGATTGAAATAATTCTCCAAGATGCAAAGATGTACACAATGACTAATTTTATTGTGTTCGACCACAAGTATAAGGAGAAGAATGGTGTGAGTAGGATGGTATTGACATTCTCCCAAAGAACTTTGGTCAATCATGTTAAGAAGCCAATCTTTCCCCTTGAGGCTTTCTACCTTAAGTCTTATGTAGATCTTCTAACTGCTGACAAATTACCAGATTCTGAAATGTTTAATTTGATCAGAAAGGTTGTTGGTAAGGAAGATCCTAGGGACTTGATCACTAGCAAAGGGAAGGAGACTAAGCGATTGGTTATCATCCTTCAAGACCTCGAGATCAATTGCATTTTGTTTGGTGAGTTGGTTGACCATCTCCTACCGCACCTTGAAGAGGAGAGAGCTGAACCACTTATTGTTGTGCTGCAATATTTTAAGGCAACAAGGTGGAATGGGAAAACATCGGTGCAAAGCAACTTTGAAATCTCGAAGGTCCATATTAATCCCGAATTAACAGAAGTCATCCAATTCAAGAGCAAGTTAAGTAGTCCTGCCGCATCAAATCCGACCAGGATCAGCCAGGTGTCATCTCCTAATGCTTGGTCTGCCTTYGATGAGTTAAAACACYGAAGTGTGGCTATCAAGACAATAGAGGAAGCTCTCAATTCCATGGAGGAAGGTCCCATATGGATATTAGGGACGATTGTATCCATCAATGCGGGAAAGGATGATTGGTTTTACAAATCTTGCAGAAGGTGCCCTAAAAAAGTTGAAACCCCCATTGAAAACAGATATGAATGTGGCAAGTGCGGACACACACACGGAACAGTGGCTCTTAGGTACAAATTAGAGGTAACAATGCACGATGGAACAGGGAGCATGTCACTACTTCTGTGGGATAGGGAGACCACAGACCATGACTACAGCAACTTGGTTGACATTTCAGGCATTGTGGTCAATCTTACGAGTAATACTGATACTCATCTTACTATGAATTTTACTGAGGAAAGTGTTTCCAGCCTCAAGTTCAAAACACCAGCTAAGAGAACTATCAGCGGTGTAAAAATTGGCAACATCAATATTAACCTGATTGAGGAGGAAGGACAAAACTCTACTAATAGGCTTAGGAGCAAGGGGACGAAGAAGCTGAAATCTCAGCTTAATGATTCTGATGTTTAA 1290 0.4054 MEEKFDLVTDVNPKKLQSHFKVYVVRIWEVPSKYNEKEIASIEIILQDAKMYTMTNFIVFDHKYKEKNGVSRMVLTFSQRTLVNHVKKPIFPLEAFYLKSYVDLLTADKLPDSEMFNLIRKVVGKEDPRDLITSKGKETKRLVIILQDLEINCILFGELVDHLLPHLEEERAEPLIVVLQYFKATRWNGKTSVQSNFEISKVHINPELTEVIQFKSKLSSPAASNPTRISQVSSPNAWSAFDELKHXSVAIKTIEEALNSMEEGPIWILGTIVSINAGKDDWFYKSCRRCPKKVETPIENRYECGKCGHTHGTVALRYKLEVTMHDGTGSMSLLLWDRETTDHDYSNLVDISGIVVNLTSNTDTHLTMNFTEESVSSLKFKTPAKRTISGVKIGNININLIEEEGQNSTNRLRSKGTKKLKSQLNDSDV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2834 429 Gene3D - 91 226 IPR012340 -
Amo17g2834 429 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 340 - -
Amo17g2834 429 Gene3D - 241 390 IPR012340 -
Amo17g2834 429 CDD RPA1_DBD_B_like 132 216 - -
Amo17g2834 429 MobiDBLite consensus disorder prediction 409 429 - -
Amo17g2834 429 SUPERFAMILY Nucleic acid-binding proteins 113 219 IPR012340 -
Amo17g2834 429 PANTHER REPLICATION FACTOR A 1, RFA1 22 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g2834 429 Pfam Replication factor-A C terminal domain 270 339 IPR013955 -
Amo17g2834 429 SUPERFAMILY Nucleic acid-binding proteins 252 339 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2834 Amo-Chr17 130282390 130284873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2834 92 329 Core DNA Replication Machinery Family AT2G06510 23.810 1.75e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2834 - - aip:107607840 674.855