Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2825 ATGTTCTGGCTATTGTGCACGTTGTTGTTGCCGGCGATGACCAGTTCTGGCCGATGTCAACGGAGGAAGGACATGGCGGCTTCTGGGGCTCAACAACGGGGAGATTCCGCCGAGGCGAGGCCGTCACCGGTGGATTCTCCGGCGGAATTGCCGGGAACCTCTGAGGATTCTGCCGTGTACGAAATTGACTACTTTTCTCAGGCAAGGAAGGCGCTGAGCGAACGTTCCCCTTATGAAGAAGAAGCGTCCACTTCTGGGGTGGTTACTCTGCCAAGTGGGTTATCTAGTTTGTTGAACCGCCATGGGGATAACCGTCGGCGGCACAAGAAGGTTCGGTCCGGGGGCGAGAAGAAGAAGAAGAAATCATCTAGGGCGAGCGAGAAGGCACGTGCTTTCAACATTTGGGACGAGACTGAGGAGTATTTTAGGGACTTATCATTGAGTGATATCGATACCTTAGTGGAGCTTTCTTCGCTGTCTAGGTTATGTTCTCGTCAGTGTTTCTCGATTCCGGTTTTGGGGAATTCTCCGAGACTCGATATAGTAGTTAATAGTAGTGAGGATGACAAGAAAGATGCAATAAAACTGGACTTAGATAGTGGCGAGGATGATAAAAAGGTTGAGGAAGACTTGGGAAGTGAGGAATGTACATTGGGAGTGGAGTCAATTGACAATGCCGCTGCCGAAAACGATTTGCCTCAGGATGATGGAAAAAATGTCTCGTGTGTTAGTTTAGAGTGGCTATTAGGTTGTAGGAGTAAGGTTTCTTTGACTTCTGAGCGCCCTACAAAGAAAAGGAAGCTTTTGAGTGGGGATGCTGATTTGCAGAAAGTTCAAATGACCATTCCTCGTGATGGGGATGAACCCTTTTGTCATTATTGTGGCATGGGGGAGACAGGCAGAGATTTGAACCGTTTGGTTGTTTGTGCCTCTTGTAAAATGGCAGTTCATCAGAAGTGCTATGGTGTGCAAGATGGCGTGGATGAGTCTTGGTTGTGCTCGTGGTGTAAGCTAAAGCGAGGTGTCGAGGGGTCGGTGAATCCTTGTGTGCTTTGCCCGAATAAAGGTGGTGCTTTGAAACCAGTTGATAGCACTGTGGAAGACGTTGAGTCTGTGCAGTTTGTGCACTTGTTTTGTTGTCTGTGGATGCCCGAGGTTTATGTAGATGATTTGAAGAAGATGGAGCCTGTTATGAACGTCGGGTCAATAAAGGAAACCCGGAGAAAATTAGTGTGTAATATTTGCAAACTGAAGTGGGGTGCATGTGTTCGTTGTAGCCATGGAACCTGCAAGACTTCTTTCCATCCGTTATGTGCAAGGGAAGCTCGACATAGGATGGAGGTGTGCGCAAAGTATGGAGATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATTTACAAGATAATAGGGGCATCTTGCCATTAGGAGACTCCCTTTCTATTGGCAATACTTTTTTTGAAGCTAATGGCCTTCCAGTAAATAGCGAACACAAGTTGAAAATTGGATGTGGTAGTCCCAATAAGTTGAACCACAATGGACTGCAAGATGTAGGACTGTCTGATTGTAGGTTAATTGCCCGTGACCTGTCTGGATGTGGTGCTGTGCAGCAACATAATGTTGGAATGGTAGGGAGGACGATTGAGAATGGTGTTGCATCTGACTCCACCAGTTTTGCACTTATTTTAAAGAAGTTGATAGACCGGGGAAAAGTTGATGCAAAGGATGTAGCAATGGAGATTGGCATTTCACCAGATTCATTAATTGCAAATATTAATGAAGCTTATATGGACCCTGATGTGGTTGACAAAATCGTCAATTGGCTGAAAGCTCATGTATACACTACTGCATTTCACAAAGGTTTAAAAGTCAAATTCAAACCACCGATTCCTTCCAAGGATGAAAGTGGAGCTGCAGAAGGTTCTGTTGCTCTTCCAACATCTGATTCAGGTTCGTTGGATCCTGTTGCTGTTAAGTCAGTACCTCCAAGGAGGAGAACTGTCAGCAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCCGAGGGGGTTACTAGTGAGAATGGGATGTCAAAAGACAAGTTCAGAGCTGATCAGTTAGACCATGAAAATCCAGGAAGTTCTAATGGAGGGTCTCCAGATGCTACTGTGGTGGACTTAACCAAGCCTGAGGATATGTTATCGAAAGTTCAAGGGAATGAAGATAAACCACACAAAACCAACTTATCTGAATGTGTTTCAGAAGAAATGTCCAAGCTTTATTCGCAGAATGCTTCTATGTTTTCTGATCGCTACTGTCCTCTCTATTCTGCTGTGAAACTTCTTGATTGTGGTTCCATAAAGGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATTGAGAAGTTGCTACAGATTCATAATGGGGAATTAATGTGCACTGGTATTTCCAAGCCTGATGAAGGAAATATGGAGCAGTTGCATAGCTCTGGAAAAATGGAACTTTTGGAATCTTCTCCAGAAGATGAAGTGGAGGGGGAACTTCTATTTTTACAGCATAGATTATTGCGGAATGCAGTTGCAAGAAAGAAGTTTACTGATAACTTAATCTCCAATGTGGCAAAGAGGTTGCCGCAGGAGATTGATGCAGCGCATCAGCGAAGGTGGGACTCTGTGATTGTTAATCGATATCTGCGTGATCTTAGGGAGGCAAAAAAGCTAGGTAGGAAAGAAAGAAAGCACAAGGAAGCCCAAGCTGTTCTGGCTGCTGCAACTGCTGCTGCTGCGGCATCTTCTCGGGTTTCTTCCTTCCGAAAAGACTCTCTAGATGAATCTATGCAACAAGAGAATTTGTTGAAGTTGGATGCTTTAAGTGGGAGGAATGGTGCTGGTTCTCAGCCAATGCCAAGAGCTAAAGAGACACTTTCAACAGTAGCTGTGACAAGAACGTCATCAGAGAAATATTCTGATTTCAGCTTGCCAACCTCAGAATATTCTAAGGAGCAATCTAAATCATGTGATATCTGCAGACGATCTGAGACTTTGTTTAATCCCATCCTTGTCTGCTCTGGTTGCAAGGTTGCAGTGCATTTGGACTGTTATCGTAGTGTGAAAGAAACTACTGGCCCATGGTACTGTGAATTATGTGAAGATGTAACATCTAAAAGCTGTGCAACATCTGCTATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCCCTTTGCGGTGGTACTACTGGAGCTTTTAGGAAATCTTCTGATGGTCAATGGATTCATGCCTTCTGTGCTGAGTGGGTTTTCGAGTCAACATTCAGAAGAGGCCAAATAAATCCAGTTGAAGGAATGCAGTCTGCGCTGAAGGGAGTTGACAAATGTTGCATTTGCCACCGCAAGCATGGTGTTTGTATGAAGTGTTGCTATGGCCATTGTCAAACCTCATTCCATCCATCATGTGCTAGAAGTGCTGGTTATTACATGATTGTGAGGACTACTAGTGGCAAACCACAACACAAGGCTTACTGTGAAAAGCACAGTTTGGAGCAAAAGGCAAAGTCTGAAAAACATGGAATCGAAGAGCTTAAAAGTATGAAGCAAATCCGGGTTGAACTGGAGAGATTACGTCTCCTCTGTGAGAGGATTGTCAAACGTGAAAAATTAAAGCGTGAATTGGTTCTTTGCTCGCATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACATCCCTTAGAGGAAACACAGAGGGATACAGATCATGCAGTGAAGCAATCCAAAGATCTGATGACATAACTGTGGACAGTTCAGTTTCAGATAAGCACCGTCTGAGAGCTGCTGTATCCATGGACACTGATCCCAAATTGGATGATGACTGCTCAACCTCACAAAGCCGCTATAATCACAAGATCCCAGATAGGGTTCAATTTTCTGGCAAGCAGATTCCTCGAAGAGCTTATGCCGTGGCACGCAATGTTTCAGATGAGAGTGGCGGATTGAGATCCAAATCTAGAAAGCATGCAGACACATTTGGAAAAGAGCTCGTTATGACGTCTGACGAAGCGTCTATGAAGAATTTAAGGTTACCGAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGATAAGCAGTGTAAGGAGAATGTTTAA 4203 0.4423 MFWLLCTLLLPAMTSSGRCQRRKDMAASGAQQRGDSAEARPSPVDSPAELPGTSEDSAVYEIDYFSQARKALSERSPYEEEASTSGVVTLPSGLSSLLNRHGDNRRRHKKVRSGGEKKKKKSSRASEKARAFNIWDETEEYFRDLSLSDIDTLVELSSLSRLCSRQCFSIPVLGNSPRLDIVVNSSEDDKKDAIKLDLDSGEDDKKVEEDLGSEECTLGVESIDNAAAENDLPQDDGKNVSCVSLEWLLGCRSKVSLTSERPTKKRKLLSGDADLQKVQMTIPRDGDEPFCHYCGMGETGRDLNRLVVCASCKMAVHQKCYGVQDGVDESWLCSWCKLKRGVEGSVNPCVLCPNKGGALKPVDSTVEDVESVQFVHLFCCLWMPEVYVDDLKKMEPVMNVGSIKETRRKLVCNICKLKWGACVRCSHGTCKTSFHPLCAREARHRMEVCAKYGDDNVELRAFCLKHSDLQDNRGILPLGDSLSIGNTFFEANGLPVNSEHKLKIGCGSPNKLNHNGLQDVGLSDCRLIARDLSGCGAVQQHNVGMVGRTIENGVASDSTSFALILKKLIDRGKVDAKDVAMEIGISPDSLIANINEAYMDPDVVDKIVNWLKAHVYTTAFHKGLKVKFKPPIPSKDESGAAEGSVALPTSDSGSLDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTSENGMSKDKFRADQLDHENPGSSNGGSPDATVVDLTKPEDMLSKVQGNEDKPHKTNLSECVSEEMSKLYSQNASMFSDRYCPLYSAVKLLDCGSIKVEASSSYIHPSIEKLLQIHNGELMCTGISKPDEGNMEQLHSSGKMELLESSPEDEVEGELLFLQHRLLRNAVARKKFTDNLISNVAKRLPQEIDAAHQRRWDSVIVNRYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSLDESMQQENLLKLDALSGRNGAGSQPMPRAKETLSTVAVTRTSSEKYSDFSLPTSEYSKEQSKSCDICRRSETLFNPILVCSGCKVAVHLDCYRSVKETTGPWYCELCEDVTSKSCATSAINFWEKPYFVAECALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQINPVEGMQSALKGVDKCCICHRKHGVCMKCCYGHCQTSFHPSCARSAGYYMIVRTTSGKPQHKAYCEKHSLEQKAKSEKHGIEELKSMKQIRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLRGNTEGYRSCSEAIQRSDDITVDSSVSDKHRLRAAVSMDTDPKLDDDCSTSQSRYNHKIPDRVQFSGKQIPRRAYAVARNVSDESGGLRSKSRKHADTFGKELVMTSDEASMKNLRLPKGYAYVPADCLSNDKQCKENV* 1401
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2825 1400 MobiDBLite consensus disorder prediction 17 56 - -
Amo17g2825 1400 Coils Coil 1195 1215 - -
Amo17g2825 1400 MobiDBLite consensus disorder prediction 702 722 - -
Amo17g2825 1400 MobiDBLite consensus disorder prediction 102 119 - -
Amo17g2825 1400 MobiDBLite consensus disorder prediction 75 125 - -
Amo17g2825 1400 SUPERFAMILY FYVE/PHD zinc finger 279 339 IPR011011 -
Amo17g2825 1400 ProSiteProfiles Zinc finger PHD-type profile. 288 339 IPR019787 -
Amo17g2825 1400 SMART PHD_3 1002 1047 IPR001965 -
Amo17g2825 1400 SMART PHD_3 411 467 IPR001965 -
Amo17g2825 1400 SMART PHD_3 290 337 IPR001965 -
Amo17g2825 1400 SMART PHD_3 1123 1177 IPR001965 -
Amo17g2825 1400 ProSiteProfiles Zinc finger PHD-type profile. 1000 1049 IPR019787 -
Amo17g2825 1400 ProSiteProfiles Extended PHD (ePHD) domain profile. 346 467 IPR034732 -
Amo17g2825 1400 ProSitePatterns Zinc finger PHD-type signature. 1003 1046 IPR019786 -
Amo17g2825 1400 MobiDBLite consensus disorder prediction 631 663 - -
Amo17g2825 1400 MobiDBLite consensus disorder prediction 78 99 - -
Amo17g2825 1400 CDD ePHD 1071 1176 - -
Amo17g2825 1400 Pfam PHD-finger 1014 1047 - -
Amo17g2825 1400 Pfam PHD-finger 304 337 - -
Amo17g2825 1400 ProSiteProfiles Extended PHD (ePHD) domain profile. 1068 1177 IPR034732 -
Amo17g2825 1400 ProSitePatterns Zinc finger PHD-type signature. 291 336 IPR019786 -
Amo17g2825 1400 Pfam PHD-zinc-finger like domain 1070 1176 - -
Amo17g2825 1400 Pfam PHD-zinc-finger like domain 348 466 - -
Amo17g2825 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 469 IPR013083 -
Amo17g2825 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1068 1178 IPR013083 -
Amo17g2825 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 990 1052 IPR013083 -
Amo17g2825 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 341 IPR013083 -
Amo17g2825 1400 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 241 471 - -
Amo17g2825 1400 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 819 1399 - -
Amo17g2825 1400 SUPERFAMILY FYVE/PHD zinc finger 992 1047 IPR011011 -
Amo17g2825 1400 PANTHER PHD FINGER PROTEINS 241 471 - -
Amo17g2825 1400 PANTHER PHD FINGER PROTEINS 819 1399 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo17g2825 Amo-Chr17 130164566 130173926 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2825 285 469 C2H2 Transcription Factor Family AT3G14740 29.843 6.04e-17 82.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo17g2825 zf-HC5HC2H_2 2.3e-23 CL0390
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2825 - - aip:107606101 2775.73
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2825 17 130164566 130173926 Amo17g2825 17 130164566 130173926 ECH
Amo08g0733 08 13044365 13053529 Amo17g2825 17 130164566 130173926 hybridization