Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo17g2825 | ATGTTCTGGCTATTGTGCACGTTGTTGTTGCCGGCGATGACCAGTTCTGGCCGATGTCAACGGAGGAAGGACATGGCGGCTTCTGGGGCTCAACAACGGGGAGATTCCGCCGAGGCGAGGCCGTCACCGGTGGATTCTCCGGCGGAATTGCCGGGAACCTCTGAGGATTCTGCCGTGTACGAAATTGACTACTTTTCTCAGGCAAGGAAGGCGCTGAGCGAACGTTCCCCTTATGAAGAAGAAGCGTCCACTTCTGGGGTGGTTACTCTGCCAAGTGGGTTATCTAGTTTGTTGAACCGCCATGGGGATAACCGTCGGCGGCACAAGAAGGTTCGGTCCGGGGGCGAGAAGAAGAAGAAGAAATCATCTAGGGCGAGCGAGAAGGCACGTGCTTTCAACATTTGGGACGAGACTGAGGAGTATTTTAGGGACTTATCATTGAGTGATATCGATACCTTAGTGGAGCTTTCTTCGCTGTCTAGGTTATGTTCTCGTCAGTGTTTCTCGATTCCGGTTTTGGGGAATTCTCCGAGACTCGATATAGTAGTTAATAGTAGTGAGGATGACAAGAAAGATGCAATAAAACTGGACTTAGATAGTGGCGAGGATGATAAAAAGGTTGAGGAAGACTTGGGAAGTGAGGAATGTACATTGGGAGTGGAGTCAATTGACAATGCCGCTGCCGAAAACGATTTGCCTCAGGATGATGGAAAAAATGTCTCGTGTGTTAGTTTAGAGTGGCTATTAGGTTGTAGGAGTAAGGTTTCTTTGACTTCTGAGCGCCCTACAAAGAAAAGGAAGCTTTTGAGTGGGGATGCTGATTTGCAGAAAGTTCAAATGACCATTCCTCGTGATGGGGATGAACCCTTTTGTCATTATTGTGGCATGGGGGAGACAGGCAGAGATTTGAACCGTTTGGTTGTTTGTGCCTCTTGTAAAATGGCAGTTCATCAGAAGTGCTATGGTGTGCAAGATGGCGTGGATGAGTCTTGGTTGTGCTCGTGGTGTAAGCTAAAGCGAGGTGTCGAGGGGTCGGTGAATCCTTGTGTGCTTTGCCCGAATAAAGGTGGTGCTTTGAAACCAGTTGATAGCACTGTGGAAGACGTTGAGTCTGTGCAGTTTGTGCACTTGTTTTGTTGTCTGTGGATGCCCGAGGTTTATGTAGATGATTTGAAGAAGATGGAGCCTGTTATGAACGTCGGGTCAATAAAGGAAACCCGGAGAAAATTAGTGTGTAATATTTGCAAACTGAAGTGGGGTGCATGTGTTCGTTGTAGCCATGGAACCTGCAAGACTTCTTTCCATCCGTTATGTGCAAGGGAAGCTCGACATAGGATGGAGGTGTGCGCAAAGTATGGAGATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATTTACAAGATAATAGGGGCATCTTGCCATTAGGAGACTCCCTTTCTATTGGCAATACTTTTTTTGAAGCTAATGGCCTTCCAGTAAATAGCGAACACAAGTTGAAAATTGGATGTGGTAGTCCCAATAAGTTGAACCACAATGGACTGCAAGATGTAGGACTGTCTGATTGTAGGTTAATTGCCCGTGACCTGTCTGGATGTGGTGCTGTGCAGCAACATAATGTTGGAATGGTAGGGAGGACGATTGAGAATGGTGTTGCATCTGACTCCACCAGTTTTGCACTTATTTTAAAGAAGTTGATAGACCGGGGAAAAGTTGATGCAAAGGATGTAGCAATGGAGATTGGCATTTCACCAGATTCATTAATTGCAAATATTAATGAAGCTTATATGGACCCTGATGTGGTTGACAAAATCGTCAATTGGCTGAAAGCTCATGTATACACTACTGCATTTCACAAAGGTTTAAAAGTCAAATTCAAACCACCGATTCCTTCCAAGGATGAAAGTGGAGCTGCAGAAGGTTCTGTTGCTCTTCCAACATCTGATTCAGGTTCGTTGGATCCTGTTGCTGTTAAGTCAGTACCTCCAAGGAGGAGAACTGTCAGCAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCCGAGGGGGTTACTAGTGAGAATGGGATGTCAAAAGACAAGTTCAGAGCTGATCAGTTAGACCATGAAAATCCAGGAAGTTCTAATGGAGGGTCTCCAGATGCTACTGTGGTGGACTTAACCAAGCCTGAGGATATGTTATCGAAAGTTCAAGGGAATGAAGATAAACCACACAAAACCAACTTATCTGAATGTGTTTCAGAAGAAATGTCCAAGCTTTATTCGCAGAATGCTTCTATGTTTTCTGATCGCTACTGTCCTCTCTATTCTGCTGTGAAACTTCTTGATTGTGGTTCCATAAAGGTGGAAGCCAGCTCTAGCTACATTCACCCATCCATTGAGAAGTTGCTACAGATTCATAATGGGGAATTAATGTGCACTGGTATTTCCAAGCCTGATGAAGGAAATATGGAGCAGTTGCATAGCTCTGGAAAAATGGAACTTTTGGAATCTTCTCCAGAAGATGAAGTGGAGGGGGAACTTCTATTTTTACAGCATAGATTATTGCGGAATGCAGTTGCAAGAAAGAAGTTTACTGATAACTTAATCTCCAATGTGGCAAAGAGGTTGCCGCAGGAGATTGATGCAGCGCATCAGCGAAGGTGGGACTCTGTGATTGTTAATCGATATCTGCGTGATCTTAGGGAGGCAAAAAAGCTAGGTAGGAAAGAAAGAAAGCACAAGGAAGCCCAAGCTGTTCTGGCTGCTGCAACTGCTGCTGCTGCGGCATCTTCTCGGGTTTCTTCCTTCCGAAAAGACTCTCTAGATGAATCTATGCAACAAGAGAATTTGTTGAAGTTGGATGCTTTAAGTGGGAGGAATGGTGCTGGTTCTCAGCCAATGCCAAGAGCTAAAGAGACACTTTCAACAGTAGCTGTGACAAGAACGTCATCAGAGAAATATTCTGATTTCAGCTTGCCAACCTCAGAATATTCTAAGGAGCAATCTAAATCATGTGATATCTGCAGACGATCTGAGACTTTGTTTAATCCCATCCTTGTCTGCTCTGGTTGCAAGGTTGCAGTGCATTTGGACTGTTATCGTAGTGTGAAAGAAACTACTGGCCCATGGTACTGTGAATTATGTGAAGATGTAACATCTAAAAGCTGTGCAACATCTGCTATCAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCCCTTTGCGGTGGTACTACTGGAGCTTTTAGGAAATCTTCTGATGGTCAATGGATTCATGCCTTCTGTGCTGAGTGGGTTTTCGAGTCAACATTCAGAAGAGGCCAAATAAATCCAGTTGAAGGAATGCAGTCTGCGCTGAAGGGAGTTGACAAATGTTGCATTTGCCACCGCAAGCATGGTGTTTGTATGAAGTGTTGCTATGGCCATTGTCAAACCTCATTCCATCCATCATGTGCTAGAAGTGCTGGTTATTACATGATTGTGAGGACTACTAGTGGCAAACCACAACACAAGGCTTACTGTGAAAAGCACAGTTTGGAGCAAAAGGCAAAGTCTGAAAAACATGGAATCGAAGAGCTTAAAAGTATGAAGCAAATCCGGGTTGAACTGGAGAGATTACGTCTCCTCTGTGAGAGGATTGTCAAACGTGAAAAATTAAAGCGTGAATTGGTTCTTTGCTCGCATGACATACTTGCCTTCAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACATCCCTTAGAGGAAACACAGAGGGATACAGATCATGCAGTGAAGCAATCCAAAGATCTGATGACATAACTGTGGACAGTTCAGTTTCAGATAAGCACCGTCTGAGAGCTGCTGTATCCATGGACACTGATCCCAAATTGGATGATGACTGCTCAACCTCACAAAGCCGCTATAATCACAAGATCCCAGATAGGGTTCAATTTTCTGGCAAGCAGATTCCTCGAAGAGCTTATGCCGTGGCACGCAATGTTTCAGATGAGAGTGGCGGATTGAGATCCAAATCTAGAAAGCATGCAGACACATTTGGAAAAGAGCTCGTTATGACGTCTGACGAAGCGTCTATGAAGAATTTAAGGTTACCGAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGATAAGCAGTGTAAGGAGAATGTTTAA | 4203 | 0.4423 | MFWLLCTLLLPAMTSSGRCQRRKDMAASGAQQRGDSAEARPSPVDSPAELPGTSEDSAVYEIDYFSQARKALSERSPYEEEASTSGVVTLPSGLSSLLNRHGDNRRRHKKVRSGGEKKKKKSSRASEKARAFNIWDETEEYFRDLSLSDIDTLVELSSLSRLCSRQCFSIPVLGNSPRLDIVVNSSEDDKKDAIKLDLDSGEDDKKVEEDLGSEECTLGVESIDNAAAENDLPQDDGKNVSCVSLEWLLGCRSKVSLTSERPTKKRKLLSGDADLQKVQMTIPRDGDEPFCHYCGMGETGRDLNRLVVCASCKMAVHQKCYGVQDGVDESWLCSWCKLKRGVEGSVNPCVLCPNKGGALKPVDSTVEDVESVQFVHLFCCLWMPEVYVDDLKKMEPVMNVGSIKETRRKLVCNICKLKWGACVRCSHGTCKTSFHPLCAREARHRMEVCAKYGDDNVELRAFCLKHSDLQDNRGILPLGDSLSIGNTFFEANGLPVNSEHKLKIGCGSPNKLNHNGLQDVGLSDCRLIARDLSGCGAVQQHNVGMVGRTIENGVASDSTSFALILKKLIDRGKVDAKDVAMEIGISPDSLIANINEAYMDPDVVDKIVNWLKAHVYTTAFHKGLKVKFKPPIPSKDESGAAEGSVALPTSDSGSLDPVAVKSVPPRRRTVSNIRILKDNKVICSSEGVTSENGMSKDKFRADQLDHENPGSSNGGSPDATVVDLTKPEDMLSKVQGNEDKPHKTNLSECVSEEMSKLYSQNASMFSDRYCPLYSAVKLLDCGSIKVEASSSYIHPSIEKLLQIHNGELMCTGISKPDEGNMEQLHSSGKMELLESSPEDEVEGELLFLQHRLLRNAVARKKFTDNLISNVAKRLPQEIDAAHQRRWDSVIVNRYLRDLREAKKLGRKERKHKEAQAVLAAATAAAAASSRVSSFRKDSLDESMQQENLLKLDALSGRNGAGSQPMPRAKETLSTVAVTRTSSEKYSDFSLPTSEYSKEQSKSCDICRRSETLFNPILVCSGCKVAVHLDCYRSVKETTGPWYCELCEDVTSKSCATSAINFWEKPYFVAECALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQINPVEGMQSALKGVDKCCICHRKHGVCMKCCYGHCQTSFHPSCARSAGYYMIVRTTSGKPQHKAYCEKHSLEQKAKSEKHGIEELKSMKQIRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDHVARSVLVHSPFILPDGSSESATTSLRGNTEGYRSCSEAIQRSDDITVDSSVSDKHRLRAAVSMDTDPKLDDDCSTSQSRYNHKIPDRVQFSGKQIPRRAYAVARNVSDESGGLRSKSRKHADTFGKELVMTSDEASMKNLRLPKGYAYVPADCLSNDKQCKENV* | 1401 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 17 | 56 | - | - | |
| Amo17g2825 | 1400 | Coils | Coil | 1195 | 1215 | - | - | |
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 702 | 722 | - | - | |
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 102 | 119 | - | - | |
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 75 | 125 | - | - | |
| Amo17g2825 | 1400 | SUPERFAMILY | FYVE/PHD zinc finger | 279 | 339 | IPR011011 | - | |
| Amo17g2825 | 1400 | ProSiteProfiles | Zinc finger PHD-type profile. | 288 | 339 | IPR019787 | - | |
| Amo17g2825 | 1400 | SMART | PHD_3 | 1002 | 1047 | IPR001965 | - | |
| Amo17g2825 | 1400 | SMART | PHD_3 | 411 | 467 | IPR001965 | - | |
| Amo17g2825 | 1400 | SMART | PHD_3 | 290 | 337 | IPR001965 | - | |
| Amo17g2825 | 1400 | SMART | PHD_3 | 1123 | 1177 | IPR001965 | - | |
| Amo17g2825 | 1400 | ProSiteProfiles | Zinc finger PHD-type profile. | 1000 | 1049 | IPR019787 | - | |
| Amo17g2825 | 1400 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 346 | 467 | IPR034732 | - | |
| Amo17g2825 | 1400 | ProSitePatterns | Zinc finger PHD-type signature. | 1003 | 1046 | IPR019786 | - | |
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 631 | 663 | - | - | |
| Amo17g2825 | 1400 | MobiDBLite | consensus disorder prediction | 78 | 99 | - | - | |
| Amo17g2825 | 1400 | CDD | ePHD | 1071 | 1176 | - | - | |
| Amo17g2825 | 1400 | Pfam | PHD-finger | 1014 | 1047 | - | - | |
| Amo17g2825 | 1400 | Pfam | PHD-finger | 304 | 337 | - | - | |
| Amo17g2825 | 1400 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 1068 | 1177 | IPR034732 | - | |
| Amo17g2825 | 1400 | ProSitePatterns | Zinc finger PHD-type signature. | 291 | 336 | IPR019786 | - | |
| Amo17g2825 | 1400 | Pfam | PHD-zinc-finger like domain | 1070 | 1176 | - | - | |
| Amo17g2825 | 1400 | Pfam | PHD-zinc-finger like domain | 348 | 466 | - | - | |
| Amo17g2825 | 1400 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 469 | IPR013083 | - | |
| Amo17g2825 | 1400 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1068 | 1178 | IPR013083 | - | |
| Amo17g2825 | 1400 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 990 | 1052 | IPR013083 | - | |
| Amo17g2825 | 1400 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 341 | IPR013083 | - | |
| Amo17g2825 | 1400 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 241 | 471 | - | - | |
| Amo17g2825 | 1400 | PANTHER | PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED | 819 | 1399 | - | - | |
| Amo17g2825 | 1400 | SUPERFAMILY | FYVE/PHD zinc finger | 992 | 1047 | IPR011011 | - | |
| Amo17g2825 | 1400 | PANTHER | PHD FINGER PROTEINS | 241 | 471 | - | - | |
| Amo17g2825 | 1400 | PANTHER | PHD FINGER PROTEINS | 819 | 1399 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo17g2825 | Amo-Chr17 | 130164566 | 130173926 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo17g2825 | 285 | 469 | C2H2 Transcription Factor Family | AT3G14740 | 29.843 | 6.04e-17 | 82.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Amo17g2825 | zf-HC5HC2H_2 | 2.3e-23 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo17g2825 | - | - | aip:107606101 | 2775.73 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo17g2825 | 17 | 130164566 | 130173926 | Amo17g2825 | 17 | 130164566 | 130173926 | ECH | |
| Amo08g0733 | 08 | 13044365 | 13053529 | Amo17g2825 | 17 | 130164566 | 130173926 | hybridization |