Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2822 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCAAAACCTTTCACCTCTGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGATCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTCTTCCTGTCACCAATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGCGGCAACGGCAATGGCGACGATGAAGAGGTTATCTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGCGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTTCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGATCTCCATGGCGCCGTATGGGAGTTTCGCCACATCTACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCCGGCGATACTGTGGTTTTCATGAAGGACTCCCATGGGAGGATGTTCGTCGGGCTCCGCCGTAATATGTCGCTGGAGGACGGTATCTCAGATGGTGGATTGGATTGGGTTGCAGCTATGGTCGGGATGGACGAGGGCGAAAAAGAAAAAGAAGAGGAAGAAGAAGAGGCGATGACACAGGGATTTGCAAGAAACGAGAAGGGGAGAGTGACTTCGACATCGGTCGCGGAGGCGATGGAGCTGGCGGCGCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTGAAAGCAGAGAAGGTGGACGCGATGATTAATGGTATTCCCTGGAGTGTTGGGATGAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGAACTGTTTCTGCTGTTAATGTTCCCGGTAAAGATCAACCATGGAGCGGTTCTCCTTGGCGCACGCTTCAGATTACATGGGATGAATCCGAAATTTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTCTTACTTCCTCAAATATTTTTCCCAACAAAGAGGTTCAGAACTACAGATGGTTCTGGAGTATTCACTAATGAAATGGGAGAATCCTCCTCTTCCGTTACAAGATTTTCTATTCCTGATTCAACAATGGGATTGCTGAATCAAACATTGTTGAGTAATTATGATACTCTTTTTTCTGCTAGCATGCAGGGAGCCAGGCCTCATCTATTTTCTGCAACTACTTATCCCTTCATTCCGATGGATCCTTCTCTGTCTATTGATAATTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACAGCAACTCAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAAGTTTCTGATAAAATTGCTGACTATAACAATGTTGAAGGAGAAGACAACATACAATAA 1701 0.4785 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPQNLSPLVYSRPVIPCRVAAVNYFADPNTDEVFLKILLLPVTNGSAQDFLPPAVAAEGNSGNGNGDDEEVISYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSHGRMFVGLRRNMSLEDGISDGGLDWVAAMVGMDEGEKEKEEEEEEAMTQGFARNEKGRVTSTSVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEKVDAMINGIPWSVGMRVKMGRENYDSSRMDWFQGTVSAVNVPGKDQPWSGSPWRTLQITWDESEILKNVNPVSPWQVELLSETLLLPQIFFPTKRFRTTDGSGVFTNEMGESSSSVTRFSIPDSTMGLLNQTLLSNYDTLFSASMQGARPHLFSATTYPFIPMDPSLSIDNSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNSNSTKSGATSFQLFGCTIQTDQVSDKIADYNNVEGEDNIQ* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2822 566 MobiDBLite consensus disorder prediction 504 532 - -
Amo17g2822 566 Gene3D - 124 229 IPR015300 -
Amo17g2822 566 PANTHER AUXIN RESPONSE FACTOR 15 557 - -
Amo17g2822 566 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Amo17g2822 566 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 557 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo17g2822 566 SMART B3_2 127 229 IPR003340 GO:0003677
Amo17g2822 566 CDD B3_DNA 126 227 IPR003340 GO:0003677
Amo17g2822 566 MobiDBLite consensus disorder prediction 511 532 - -
Amo17g2822 566 Pfam Auxin response factor 284 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo17g2822 566 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Amo17g2822 566 Gene3D - 323 396 - -
Amo17g2822 566 SUPERFAMILY DNA-binding pseudobarrel domain 124 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2822 Amo-Chr17 130130640 130132715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2822 22 551 B3 DNA Binding Superfamily AT1G77850 43.203 6.84e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo17g2822 B3 5.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2822 - - aip:107607845 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0737 08 13077398 13079423 Amo17g2822 17 130130640 130132715 hybridization