Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2821 ATGCCTCGCCTTCGCCGTAGTTCTCCCACGCTCTCAACATCGCCGTCGAGTCCAACCCCTATACCCGCCAAATTCTGGCGCGCATGCGCTGGAATCTCTGCGCGGGCACCAGTAATGAACTCTAAGGTTTATTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGAAACCGCGAAATCTTTCATCTCTAGTTTACGCCAGGCCGGTCATCCCTTGCCGTGTCTCCGCCGTCAATTTCTTCGCGGACCGTAATACTGACGAGGTCTTCCTCAAGATTCTTCTCCATCCTGTCACCGATGGATCAGCTCAAGATTTTTTTCCACCTGCCGGCGCCGCCGAAGGCAGCGGTGGCAATGGCAATGGCGACGATGAAAAGGTTGAGTCGTATGCCAAGATTCTCACGCGGTCAGATGCGAACAATGGTGGAGCATTTTTGGTGCCGAGGCTCTGTGCGGACTTGATCCTCCCGCCGTTGAACTTTGAAGAAAAACGGCCGGGGCAGACGCTTAGCATTACCGACCTTCATGGCAATGTTTGGGAGTTCCGCCATGGCTACCGCGGAAGGCCGAAGCGGCACCTTTTGACTGCAGGGTGGAGCAAGTTCGTGGACAGCAAGAAGCTTATCTACGGGGATACTCTAATCTTCATGAAGGACTCCGATGGGAAGATATTCGTCGGGTTACGCCGCAATATGTCGCCGGACGAGGACGGATTGGACTGGTTATCAGCAGCGTCCGTGGGGATGGACGAGCTGGAAAAGGAAGAAGAAGAGGTGATGACAGAAGGGTTTGCAAGGAACGGGAAGGGGAGGGTGACTTCAGCGTCGGTGGCAGAGGCTATGGAGCTGGCAGCGCAGAACAAGCCGTTCGAAGTTATTTACTATCCGAGTGTGGGATGGGAGGAGTTTATTGTGAAGGCAGAAGATGTGGAGACGAAGATGAATGATGTTCTTTATAGTGTTGGGAAGAGAGTGAAGATGGCCAGAGAGAACTACGATTCTTCGCAGATGACTTGGTTTCAAGGAACTGTTTCTGGTATTTCTGTTCCCGCTGATGATCAACCATGGAGCAGTTCTCCTTGGCGCATGCTTCAGGTCACATGGGATGATCATGATGAAATCTTGAAGAATGCAAACTCAGTCAGTCCATGGCAGGTGGAGATTCTTTCTGCCTTACCTTCAACTCCCGCGGCATTCCCCCCAACAAAGAAGCTTAGAGTTACTAATAGAGAGGAAGAATCCTCCCTTTCTATACCAAGATTCTCTAGTCCTAATTCAGCAATGGTACTGTTTAAAGAAGCATTATTGAGTTATTATGGCAAAACTTCTCCTGCTGCCATGCAGGGAGCCAGGCATGATGTCTCTTCTGCTCCTATTTGTTCCATTTTTGCAAGTAACAACTCTCCAACGTTTATGGATAATTCCTTGGGGAACAACATAGTAGTACCGAGGACTGATACTATATTGACAGAACAACCTAACAGCAACTCAGCCAAATCTGGCCATTCTACTACTGTTTCATTTCAGCTATTTGGTCATACTATCCGGTTAGAACAACCTGCTGAAATTGGTGACCATAATAGAGATGACAATAATAGAGACATTGACAACCCAGTCCAACAAACTTTGACTTGCACAAACTTACTTCATTACCTTGATGATGGGGAATATCTGCGCAAGTGA 1683 0.489 MPRLRRSSPTLSTSPSSPTPIPAKFWRACAGISARAPVMNSKVYYFPQGHIDQAASKPRNLSSLVYARPVIPCRVSAVNFFADRNTDEVFLKILLHPVTDGSAQDFFPPAGAAEGSGGNGNGDDEKVESYAKILTRSDANNGGAFLVPRLCADLILPPLNFEEKRPGQTLSITDLHGNVWEFRHGYRGRPKRHLLTAGWSKFVDSKKLIYGDTLIFMKDSDGKIFVGLRRNMSPDEDGLDWLSAASVGMDELEKEEEEVMTEGFARNGKGRVTSASVAEAMELAAQNKPFEVIYYPSVGWEEFIVKAEDVETKMNDVLYSVGKRVKMARENYDSSQMTWFQGTVSGISVPADDQPWSSSPWRMLQVTWDDHDEILKNANSVSPWQVEILSALPSTPAAFPPTKKLRVTNREEESSLSIPRFSSPNSAMVLFKEALLSYYGKTSPAAMQGARHDVSSAPICSIFASNNSPTFMDNSLGNNIVVPRTDTILTEQPNSNSAKSGHSTTVSFQLFGHTIRLEQPAEIGDHNRDDNNRDIDNPVQQTLTCTNLLHYLDDGEYLRK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2821 560 CDD B3_DNA 129 230 IPR003340 GO:0003677
Amo17g2821 560 SUPERFAMILY DNA-binding pseudobarrel domain 126 230 IPR015300 -
Amo17g2821 560 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Amo17g2821 560 Pfam Auxin response factor 280 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo17g2821 560 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Amo17g2821 560 Gene3D - 319 394 - -
Amo17g2821 560 SMART B3_2 130 232 IPR003340 GO:0003677
Amo17g2821 560 PANTHER AUXIN RESPONSE FACTOR 15 491 - -
Amo17g2821 560 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 491 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo17g2821 560 Gene3D - 127 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2821 Amo-Chr17 130065685 130067749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2821 25 544 B3 DNA Binding Superfamily AT1G77850 39.223 3.07e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo17g2821 B3 5.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2821 - - aip:107607847 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2821 17 130065685 130067749 Amo17g2821 17 130065685 130067749 ECH