Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2813 ATGGACATATTTGACACATTCCCACAAGTTAGCATGTGGGGTGACAACTTTAAGGTTGATGGTGGCCTCATAAATTCAATCACTTCTCCAATGTTGTTGGTGAGCACTAGCACCATGGCCATGGATAACAAGCCTGAATATGTTCCACATGAATTGAGGGAACAATCTAGACAAAATCAAGAGGCTACCAATAAAGATGTTAGTAAGGTACTAAGACGGCTAGCGCAGAATCGAGAGGCTGCTCGGAAGAGCCGACTGCGAAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGGAGGAGATTGTTAAAGCTAAAAAGCAGAGTATGTATATTGGAAACAATCCATTGGATGCTAGTTATATGGGATCTTCTGGATCATTAAACTCAGGGATTGTTTTGTTTGAAATTGAATATGGAAATTGGATTGAAGAGCAACACAAACTGAATGAAGAACTCAGAAATGCATTCCAAACTCAAGCACCTGATGAACAACTTAATCAACTTATTCAGACTCTGTTGAATCATTACTCAAATCTTTTCAAGATGAAATCAGATGCTGCAAAGGCTGATATATTCTACCTAATCAGTGGTGTCTGGAAATCATCCGCGGAGCGCCTTTTCCTTTGGATTGGAGGATCTCGCCCTTCGCAGCTTCTAAGTATCATTGTGCCACAGCTTGAACCTTTAACTGAACAACAAACTGCTAGCATTAGCAGACTCCGGCTATCGTCGCAACAAGCCGAAGATGCTCTCTCACAAGGACTAGATAAACTCCAGCAGAGTCTTGTCCACAACATTGCAGTTGATCCATTGGTAGCAGGAAACTTTGGGTTTCAGATGGCTGATTCCATTGAGAAAATTGAGGGACTTGAAGGCTTCCTTAACCAGGCAGATCATCTTAGGCAACAGACACTGATACACATGTCAAGGATCCTAACAACACATCAAGCTGCTCAAGGATTGCTGGCTTTGGGGCAATACTTGCAAAGACTTCGTTCTCTTAGTTCTCTTTGGGCTTCTCGTCCATCTCAACCTCTCTAG 1065 0.4216 MDIFDTFPQVSMWGDNFKVDGGLINSITSPMLLVSTSTMAMDNKPEYVPHELREQSRQNQEATNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLEEEIVKAKKQSMYIGNNPLDASYMGSSGSLNSGIVLFEIEYGNWIEEQHKLNEELRNAFQTQAPDEQLNQLIQTLLNHYSNLFKMKSDAAKADIFYLISGVWKSSAERLFLWIGGSRPSQLLSIIVPQLEPLTEQQTASISRLRLSSQQAEDALSQGLDKLQQSLVHNIAVDPLVAGNFGFQMADSIEKIEGLEGFLNQADHLRQQTLIHMSRILTTHQAAQGLLALGQYLQRLRSLSSLWASRPSQPL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2813 354 ProSiteProfiles DOG1 domain profile. 139 349 IPR025422 GO:0006351|GO:0043565
Amo17g2813 354 Pfam bZIP transcription factor 69 102 IPR004827 GO:0003700|GO:0006355
Amo17g2813 354 PANTHER TRANSCRIPTION FACTOR TGA9 1 351 - -
Amo17g2813 354 SUPERFAMILY Leucine zipper domain 69 105 IPR046347 GO:0003700|GO:0006355
Amo17g2813 354 Coils Coil 88 115 - -
Amo17g2813 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Amo17g2813 354 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 351 - -
Amo17g2813 354 SMART brlzneu 65 125 IPR004827 GO:0003700|GO:0006355
Amo17g2813 354 Gene3D - 68 119 - -
Amo17g2813 354 Pfam Seed dormancy control 158 231 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2813 Amo-Chr17 129904004 129906790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2813 1 353 Calmodulin-binding Proteins AT1G77920 52.893 1.56e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo17g2813 DOG1 8.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2813 K14431 - gmx:100794268 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0748 08 13218799 13221597 Amo17g2813 17 129904004 129906790 hybridization