Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2797 ATGTCTTCAATGGGTGCTTCAGCTGAAGAGAACCTTGAAACAAAACAGATGGATGAGAGAAGCTTTTCAATATCTTCATCACAAGGCCAACAACAGGCACCACCATATGTGCACAAAGTGGGAATTCCTCCACGACAGAACCTGTTCCAAGAATTCAAGGCAACCATCAAGGAGACATTCTTTGCTGATGATCCTCTAAGATCCTTCAAGGACCAACCGAAATCGCGAAAGTTCGTCCTCGGTATTGAGGCCTTGTTCCCCATACTCAATTGGGGGAGAAGTTATAACCTTAAGAAGTTTAGAGGAGATCTTATATCTGGCCTAACTATTGCGAGTCTTTGCATTCCCCAGGATATCGGATATGCCAAGCTTGCAAAGTTGCAACCAGAATATGGACTGTACTCAAGCTTTGTTCCACCACTAATCTATGCTGTCATGGGTAGCTCCCGTGATATCGCAATAGGACCAGTGGCAGTGGTTTCTCTCTTGTTGGGAACCTCACTTAGTAATGAGATTGATCCTACTACACATCCAGAGGAATATCTGAGACTTGCCTTCACAGCCACTTTCTTTGCTGGGATTACTCAAGCAACACTTGGGATTTTCAGGTTGGGATTCTTGATTGACTTCCTGTCCCATGCAGCTATTGTTGGTTTTATGGGGGGTGCTGCCATCACCATTGCCCTTCAACAACTTAAGGGCTTTCTTGGGATTCAAACAAAAAATTTCACAAAAAAAACTGATATTGTCAATGTGATGCATTCAGTAGTCTCCACAGCCCATCATGGATGGAATTGGGAAACTATACTCATTGGAGCAAGCTTCTTGGGTTTTCTTCTATTTGCCAAATTCATTGGAAAGAAGAATAAAAAGTTCTTCTGGGTGCCAGCAATTGCCCCATTGATATGTGTTATCTTGTCCACTTTTTTTGTATTCATAACACGTGCAGATAAACATGGAGTAGAAATTGTTAGAAACATTAAAAAAGGGATCAATCCTTCATCTGTTAAAGAAATATATTTCACCGGTGACTACCTTGGGAAAGGTTTTAGAATTGGTGTCATGGCAGGCATGATAGCACTAACTGAAGCTGTAGCAATTGGAAGAACATTTGCATCTGTGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTAGCATTAGGAGCTATGAATGTTGTAGGTTCAATGACTTCATGTTATGTTGCAACTGGTTCTTTCTCTAGGTCAGCAGTGAATTTCATGGCTGGTTGTCAAACTGCAGTATCTAATATTGTGATGTCTGTAGTTGTGTTCTTAACCCTGGAATTCATCACTCCCCTTTTCCATTACACTCCAAATGCCATTCTTTCTTCAATCATCATTTCTGCTGTCATCAACCTTGTGGACTATCAGGCAGCTATTTTGATTTGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCATTCTTTGGTGTTGTTTTTGCCACTGTTGAGATAGGACTTCTAATTGCTGTTTCTATATCCTTTGCAAAGATTCTACTACAAGTTACAAGGCCTAGAACTTGTATTTTGGGGAAGATTCCTAGAACAACTGTGTATAGAAACATCCATCAATACCCAGAAGCTAGTAAGGTTCCAGGTGTACTTATTGTGAGAGTTGATTCTGCAATATATTTCTCCAACTCCAATTATGTCAAAGAAAGGATACTAAGATGGTTGATGGATGAAGAAGAACAAGGAAAAGGAGATTACCAAACAAGAATCCAGTTTTTGATTGTTGAAATGTCACCCGTTACTGACATAGACACCAGTGGCATCCATGCCCTTGAAGAGTTACACAGAAGTCTTGAGAAGAGAGATGTTGAGCTTGTTCTGGCAAATCCTGGCCCAGTGGTGATTGACAAGATTTACACATCAAAGCTTGCAAACATGATTGGTGAGAACAAGATCTTCCTCACAGTTGCAGAGGCAGTTGCATATTGTTCTCCAAAGCTAGCTGAGGACCCATGA 1998 0.4074 MSSMGASAEENLETKQMDERSFSISSSQGQQQAPPYVHKVGIPPRQNLFQEFKATIKETFFADDPLRSFKDQPKSRKFVLGIEALFPILNWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAKLQPEYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTSLSNEIDPTTHPEEYLRLAFTATFFAGITQATLGIFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQTKNFTKKTDIVNVMHSVVSTAHHGWNWETILIGASFLGFLLFAKFIGKKNKKFFWVPAIAPLICVILSTFFVFITRADKHGVEIVRNIKKGINPSSVKEIYFTGDYLGKGFRIGVMAGMIALTEAVAIGRTFASVKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSVVVFLTLEFITPLFHYTPNAILSSIIISAVINLVDYQAAILIWKIDKFDFVACMGAFFGVVFATVEIGLLIAVSISFAKILLQVTRPRTCILGKIPRTTVYRNIHQYPEASKVPGVLIVRVDSAIYFSNSNYVKERILRWLMDEEEQGKGDYQTRIQFLIVEMSPVTDIDTSGIHALEELHRSLEKRDVELVLANPGPVVIDKIYTSKLANMIGENKIFLTVAEAVAYCSPKLAEDP* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2797 665 Gene3D STAS domain 514 661 IPR036513 -
Amo17g2797 665 TIGRFAM sulP: sulfate permease 87 653 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo17g2797 665 MobiDBLite consensus disorder prediction 18 34 - -
Amo17g2797 665 Pfam Sulfate permease family 100 482 IPR011547 GO:0016021
Amo17g2797 665 SUPERFAMILY SpoIIaa-like 536 658 IPR036513 -
Amo17g2797 665 MobiDBLite consensus disorder prediction 1 37 - -
Amo17g2797 665 CDD STAS_SulP_like_sulfate_transporter 535 650 - -
Amo17g2797 665 ProSitePatterns SLC26A transporters signature. 129 150 IPR018045 GO:0008271|GO:0008272
Amo17g2797 665 Pfam STAS domain 535 653 IPR002645 -
Amo17g2797 665 PANTHER SULFATE TRANSPORTER 17 665 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo17g2797 665 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 17 665 - -
Amo17g2797 665 ProSiteProfiles STAS domain profile. 534 657 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2797 Amo-Chr17 129516039 129519766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2797 24 664 Inorganic Solute Cotransporters AT1G22150 76.287 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2797 K17470 - gmx:100797668 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2797 17 129516039 129519766 Amo17g2797 17 129516039 129519766 ECH
Amo08g0766 08 13551129 13556988 Amo17g2797 17 129516039 129519766 hybridization