Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2779 ATGGAGGATTTGCAGAGTGTTCTTTTGGATCGCAACTTAACAGTTTCCAGTGTCCCAGAAAAGGGTCGTTCCCTCTTTGTAACAAAGGATTTTTACCCTGGGGAGGTAATCATAAGTCAAGAGCCTTATGTTTGTGTTCCAAACAACAACTCAGTTCAGAAAAGGTGCGAAGGATGTTTTACAACAACTAACCTTAAGAAATGCTCACGGTGCCAAGTTGTGTGGTACTGTGGAACCTCTTGTCAGAAGTTAGAGTGGAAGTTTCATCGTCTTGAATGTGAGGTCCTCTCTCGGCTAGACAACGACAAGAAAAAATATGTCACACCATCCATTCGATTGATGGTTAAACTTTATCTTCGAAGGAAGCTGCAAAATGAGAAGATCATACCAAGCACTGTTATGGACAACTACAACTTGGTGGAGGCTTTAGTGTCTCACATGTCTGACATCACCAAGGAGCAACTGCTGCTGTATGCGCAGATGGCTAATCTAGTAAACGTGATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGCAATGCACATACCATTTGTGACAGCGAGTTGAGACCATTGGGAACAGGATTGTATCCGGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCGTCAGTTCGAGCTGTGCAACATGTTCCCAAAGGTAGTGAGGTACTAATAAGTTACATAGAGACTGCTGGAAGCACTATGACTCGACAGAAAGCTCTCAAAGAGCAGTACCTATTCAATTGTACATGTCCTCGCTGTTCTAAACTGTTTTGA 837 0.4205 MEDLQSVLLDRNLTVSSVPEKGRSLFVTKDFYPGEVIISQEPYVCVPNNNSVQKRCEGCFTTTNLKKCSRCQVVWYCGTSCQKLEWKFHRLECEVLSRLDNDKKKYVTPSIRLMVKLYLRRKLQNEKIIPSTVMDNYNLVEALVSHMSDITKEQLLLYAQMANLVNVILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSASVRAVQHVPKGSEVLISYIETAGSTMTRQKALKEQYLFNCTCPRCSKLF* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2779 278 Pfam SET domain 22 247 IPR001214 GO:0005515
Amo17g2779 278 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Amo17g2779 278 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 276 - -
Amo17g2779 278 Gene3D - 106 190 - -
Amo17g2779 278 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Amo17g2779 278 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Amo17g2779 278 SMART set_7 11 254 IPR001214 GO:0005515
Amo17g2779 278 Pfam MYND finger 56 93 IPR002893 -
Amo17g2779 278 Gene3D SET domain 24 274 IPR046341 -
Amo17g2779 278 Gene3D - 55 105 - -
Amo17g2779 278 SUPERFAMILY SET domain 8 247 IPR046341 -
Amo17g2779 278 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2779 Amo-Chr17 129050404 129054652 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo17g2779 SET 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2779 K11426 - cit:102613642 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2779 17 129050404 129054652 Amo17g2779 17 129050404 129054652 ECH