Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2755 ATGCATCCTCATAAACACAAATATAAAACATYGTTCCATGCATGCATKCCAAAACAAACCATCATAATAATGTCTWTGAGTCCACCAAGAGAAAGAAGCAACAACAATAACAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTGCGAGCCGCACACGATAACAACCCATCCTGTCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACCCCAAGACTCTTTCTCGATTTTACCCCTAACACTAACGACCCTTCTCCACAGCCCCGTCTTCTAGAAGCTCTCTCCCTCATGCTCGATCCCGCCTTCCAACAACCCCGTCGCCGCCCCCGCATCCGCATCCGCCGCCGCCAACCTTCCGACACATCCGACCCCCACCCTACAACTCGTCCCCGAACCTGGATCATCGTCCATCCCATCGGTGCTTCCCCCGAGGAGCTCGAAGCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTGCCGATCGGGGTGGACTCCAGGGACTACTTCCTTGGTCCGGGACTGAACGAYCTGATCGAGCAGATTACCGAGAATGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCYATCAGAGGGATACCGAGYGTGAAYATAGAAGCACAGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAAGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATGGTGATGATGATGATGAATGTGTTGCTGAGGGGAGGTTTCAGAGGTGCTTGAGGTGGACGAGGGTTTCTTCTCTTTGGCCATTTCATCACCACCGTCGACGTGTTCATCCTGCTGATCCAGGACCAGGAGAGAATAATAACGCTACTGCTTCTCTCAGGGGTGCTGAATTCAGTTGTAATTTATTGGCAGCTCTGTCATCGCAGTTTAGGCAACTTGTCATGCTGTAA 1038 0.5231 MHPHKHKYKTXFHACXPKQTIIIMSXSPPRERSNNNNNGFQLYWCFQCNRMVRAAHDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNTNDPSPQPRLLEALSLMLDPAFQQPRRRPRIRIRRRQPSDTSDPHPTTRPRTWIIVHPIGASPEELEAMVPPPRRDRPVVPIGVDSRDYFLGPGLNDLIEQITENDRPGPAPAAERAIRGIPSVNIEAQHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDGDDDDECVAEGRFQRCLRWTRVSSLWPFHHHRRRVHPADPGPGENNNATASLRGAEFSCNLLAALSSQFRQLVML* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2755 345 PANTHER - 35 274 - -
Amo17g2755 345 CDD RING-H2_RNF126_like 223 265 - -
Amo17g2755 345 Pfam zinc-ribbon 41 73 IPR039525 GO:0061630
Amo17g2755 345 Pfam Ring finger domain 223 265 IPR001841 -
Amo17g2755 345 SUPERFAMILY RING/U-box 205 269 - -
Amo17g2755 345 MobiDBLite consensus disorder prediction 112 137 - -
Amo17g2755 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 274 - -
Amo17g2755 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Amo17g2755 345 ProSiteProfiles Zinc finger RING-type profile. 224 265 IPR001841 -
Amo17g2755 345 SMART ring_2 224 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2755 Amo-Chr17 128673466 128674875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2755 196 306 C3H Transcription Factor Family AT1G68180 44.828 3.00e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2755 K11982 - gmx:100787399 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2755 17 128673466 128674875 Amo17g2755 17 128673466 128674875 ECH
Amo08g0697 08 12431697 12433244 Amo17g2755 17 128673466 128674875 hybridization