LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g2749	ATGGCAAGGTTTACTTATTCAAGTTGTCACATTTGCCATGGGATGCTACTTCACATTCTTTTATTATCAGTACAGTTTTCAGCTCAACATGCAAACTGTGGCAACATAGTGAAGTACCTTCCTTTTGTGCTTGAAACTGGGTCAGTACATAGAGTAGGGGAAAATGATGATGTACAGAGTTTCTACTATTTCATTGAGTCAGAGAACAATCCAAGAGAGGATGAAATAGGACCACTTGCATTTCAAGTTGATGAATATGATGGGGAAAGTAGCATTATATTTGTAGATTTGCCTGTTAATACTGGCTTTTCATATGCTAGAACAGAATATGCTTCACTTTGGTTAATGGATCATCCAGCATTTCTCAAAAACAAAGTTTACATTGGTGGTGATTCATACTCTGGTATTCTTATTCCTATAATTGCTCACGAAATTTTAAAAGCATGGATAAGATCGTTAAACTACTCCATTGTCGACGATTGGAGGCCATGGTATACTAATGGCCAAGTTGCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTCAAGGCAAGATCTATATCTCTCTTTTTGGACACAAATGGTGATAAGATGAGTTACTTGTTTTATAATGACGGATATGGTTGCAGGGTGGAGGACACACAGCACCAGAATACAAGCTTGAAGAATGCCTTCACATGTATCAATTAA	702	0.3746	MARFTYSSCHICHGMLLHILLLSVQFSAQHANCGNIVKYLPFVLETGSVHRVGENDDVQSFYYFIESENNPREDEIGPLAFQVDEYDGESSIIFVDLPVNTGFSYARTEYASLWLMDHPAFLKNKVYIGGDSYSGILIPIIAHEILKAWIRSLNYSIVDDWRPWYTNGQVAGYTRTYSNAMTFATVKARSISLFLDTNGDKMSYLFYNDGYGCRVEDTQHQNTSLKNAFTCIN*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g2749	233	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	14	75	-	-
	Amo17g2749	233	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	147	188	-	-
	Amo17g2749	233	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	86	146	-	-
	Amo17g2749	233	PRINTS	Carboxypeptidase C serine protease (S10) family signature	114	139	IPR001563	GO:0004185\|GO:0006508
	Amo17g2749	233	PRINTS	Carboxypeptidase C serine protease (S10) family signature	95	105	IPR001563	GO:0004185\|GO:0006508
	Amo17g2749	233	SUPERFAMILY	alpha/beta-Hydrolases	40	147	IPR029058	-
	Amo17g2749	233	Gene3D	alpha/beta hydrolase	38	147	IPR029058	-
	Amo17g2749	233	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	14	75	IPR001563	GO:0004185\|GO:0006508
	Amo17g2749	233	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	147	188	IPR001563	GO:0004185\|GO:0006508
	Amo17g2749	233	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	86	146	IPR001563	GO:0004185\|GO:0006508
	Amo17g2749	233	SUPERFAMILY	alpha/beta-Hydrolases	148	187	IPR029058	-
	Amo17g2749	233	Gene3D	alpha/beta hydrolase	148	192	IPR029058	-
	Amo17g2749	233	Pfam	Serine carboxypeptidase	89	147	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g2749	Amo-Chr17	128572188	128573790	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g2749	133	188	Calmodulin-binding Proteins	AT2G22960	59.322	1.12e-16	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g2749	K16296		-	aip:107607829	224.942