Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo17g2726 | ATGGAAGGTGATGATGGAAAACAACCAACCCACAAAGAACCATGCAATAATAATAGTAGTAATAATAATGAATTATTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGCAACATACACAACCCTAGCAACCATGGAAAGTGAGGACGATGAAGAAGACGACGACGAAGATGATTATTCCTCGTTGGGCGATGAAGATGGCGATTCCGAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACCCAGTTCCTTGAAGGTGAAGGAAGCAACTACGACGAAGATGACGAGGGAGAAGAAGAAGAGATGGAAGAAGATGAAATTGATCCAGATGAAATGTCCTATGAAGAGTTGATTGAGTTGGGAGAAATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAAATCTAATAGTGATGATGAAAGAATCGATCGGTGTGTAGTTTGTCAGATAGAATATGAAGAAGGTGAATCAATGGTGGCACTGGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGCAATGAAGTTTCAACCAATAATAATAATACCAACAAGATCATGCCTAAGAATGAATAA | 681 | 0.3818 | MEGDDGKQPTHKEPCNNNSSNNNELFEQENFDYILAISLQEQEGATYTTLATMESEDDEEDDDEDDYSSLGDEDGDSEYYLESQDFEESETQFLEGEGSNYDEDDEGEEEEMEEDEIDPDEMSYEELIELGEIIGEENRGLSENEVSSCLYPYTCKSNSDDERIDRCVVCQIEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNTNKIMPKNE* | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo17g2726 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 167 | 207 | IPR001841 | - | |
| Amo17g2726 | 226 | SUPERFAMILY | RING/U-box | 166 | 214 | - | - | |
| Amo17g2726 | 226 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 21 | 216 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Amo17g2726 | 226 | SMART | ring_2 | 167 | 207 | IPR001841 | - | |
| Amo17g2726 | 226 | MobiDBLite | consensus disorder prediction | 53 | 121 | - | - | |
| Amo17g2726 | 226 | Pfam | Ring finger domain | 166 | 207 | IPR001841 | - | |
| Amo17g2726 | 226 | MobiDBLite | consensus disorder prediction | 46 | 121 | - | - | |
| Amo17g2726 | 226 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Amo17g2726 | 226 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE | 21 | 216 | - | - | |
| Amo17g2726 | 226 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Amo17g2726 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 224 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo17g2726 | Amo-Chr17 | 128065409 | 128066535 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo17g2726 | 102 | 211 | C3H Transcription Factor Family | AT3G63530 | 44.643 | 5.32e-28 | 105 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo17g2726 | K19045 | - | gmx:100526881 | 195.282 |