Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2723 ATGGCGGAGACTATCTCTCCCATGGAAATCGACGGCAACGAAACCCCTTTCCCTTCAAGTACCGACAAGGGTAAGAGGGTCTTCGTCGCCGGGAACAACTCCGGTAAAGGCAAGGCCACTCCGTGGGTCGAGAAGTACCGCCCTCAGTCCCTAGATGACGTCGCTGCTCACCGTGACATCATCAGTACCATTGATAGGCTGACTACTGAGAACAGATTGCCACATCTTCTACTATATGGTCCACCTGGCACGGGCAAAACTTCGACTATTCTTGCCGTGGCACGCAAACTCTATGGWRMGCAATACCACAARATGATTTTGGAGCTCAATGCCTCTGATGAMAGAGGAATTGATGTTGTACGSCAGCAGATTCAAGATTTTGCTAGCACCCAGAGCTTAACATTTGGTGCAAAGGCCTTAGTGAAATTGGTCTTGCTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGTACAAGGTTTGCACTTATCTGCAATCATGTAAATAAGATTATCCCTGCACTACAATCAAGGTGCACTCGATTTCGRTTTGCCCCTCTTGATGAAGTCCATGTCACTGATAGACTGAAGCATGTTATTAAAGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCTGCRCTTGTTCGSCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTATACCTGTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTATTGGCTGCTAAATGAACAATTTTCAGAGAGTTTTAGAAGAATACATGAAATCAAGACAAGGAAAGATTGGCCCTGGTAG 900 0.4411 MAETISPMEIDGNETPFPSSTDKGKRVFVAGNNSGKGKATPWVEKYRPQSLDDVAAHRDIISTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGXQYHKMILELNASDXRGIDVVRQQIQDFASTQSLTFGAKALVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDEVHVTDRLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFSESFRRIHEIKTRKDWPW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2723 299 Pfam ATPase family associated with various cellular activities (AAA) 76 197 IPR003959 GO:0005524|GO:0016887
Amo17g2723 299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Amo17g2723 299 Gene3D - 34 198 IPR027417 -
Amo17g2723 299 SMART AAA_5 72 202 IPR003593 -
Amo17g2723 299 MobiDBLite consensus disorder prediction 1 33 - -
Amo17g2723 299 CDD AAA 60 198 - -
Amo17g2723 299 PANTHER REPLICATION FACTOR C SUBUNIT 5 36 295 - -
Amo17g2723 299 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 36 295 - -
Amo17g2723 299 CDD HLD_clamp_RFC 199 261 - -
Amo17g2723 299 Gene3D - 201 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2723 Amo-Chr17 128006120 128010362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2723 1 295 Core DNA Replication Machinery Family AT1G77470 77.228 9.10e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2723 K10756 - gmx:100782652 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0626 08 11144251 11148894 Amo17g2723 17 128006120 128010362 hybridization