Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2708 ATGGAGCTTGTTGATACTACAAAGATTCAACAACAACAACAACATTTTCATGTCTTGGCAGTTGATGATAGTGTCATTGATAGAAAACTCTTGGAGAGGCTCCTTAGAGATTCTTCATGCAAAGTTACATGTGTGGACTCTGGTGACAAAGCTTTGAAATATCTTGGGCTTGTTGACGATGATGATGAACATCAAAATAATAATAACAATAATAATAATAATAGTTCTTCTTCATCAACCTCTTCAGAATCTTCTTCATTTTCTAATTCTTCTCCTTCTCCTTCTCCTCAACCATTACAACAAGAGGGAATGAAAGTGAATTTGATCATGACGGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCACCATGTGCTTGGAAGGAGGGGCAGAAGAGTTTCTATTGAAACCTCTTCAGTCAGAAGATTTAAAGAAGCTTCAACCCTATTTTCTGAAACCACTTGATAATAATTCAAGTGAAGAAGGAGAATCTGCTAATAGTTCTATAGATTCAGACAATGAAAATAATCTCATCAGCAACAATAATAATATTAACAATAATAATAATAATAATAATAATAATAGTATTAGCAAAAGGAAGGCTATGTCTCCTGATGAGCCTCCAGAAAGATCAAGACCCAAAATGAAAGGGTTGGAAGTGGTGTAA 747 0.3494 MELVDTTKIQQQQQHFHVLAVDDSVIDRKLLERLLRDSSCKVTCVDSGDKALKYLGLVDDDDEHQNNNNNNNNNSSSSSTSSESSSFSNSSPSPSPQPLQQEGMKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRITMCLEGGAEEFLLKPLQSEDLKKLQPYFLKPLDNNSSEEGESANSSIDSDNENNLISNNNNINNNNNNNNNNSISKRKAMSPDEPPERSRPKMKGLEVV* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2708 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 9 247 - -
Amo17g2708 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 247 IPR045279 GO:0009736
Amo17g2708 248 Pfam Response regulator receiver domain 103 172 IPR001789 GO:0000160
Amo17g2708 248 MobiDBLite consensus disorder prediction 181 248 - -
Amo17g2708 248 MobiDBLite consensus disorder prediction 67 100 - -
Amo17g2708 248 ProSiteProfiles Response regulatory domain profile. 17 178 IPR001789 GO:0000160
Amo17g2708 248 SMART REC_2 16 174 IPR001789 GO:0000160
Amo17g2708 248 MobiDBLite consensus disorder prediction 60 100 - -
Amo17g2708 248 SUPERFAMILY CheY-like 104 173 IPR011006 -
Amo17g2708 248 SUPERFAMILY CheY-like 16 55 IPR011006 -
Amo17g2708 248 MobiDBLite consensus disorder prediction 181 227 - -
Amo17g2708 248 Gene3D - 17 225 - -
Amo17g2708 248 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2708 Amo-Chr17 127548704 127552492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2708 13 193 Response Regulator Gene Family AT3G57040 52.459 4.49e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo17g2708 Response_reg 3.9e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2708 K14492 - gmx:100801334 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0640 08 11445996 11449562 Amo17g2708 17 127548704 127552492 hybridization