Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2704 ATGAATGATTCAACTTCAAATCAGTTGAATGATAACGATCTGGTTTATTCTTCTGAAACGAATGATGCTGATGAGACTAGATGTGTTGTGGATGAAAAATTTGTCCCAAAGGTGGGGATGATTTTCAAGACACTAGAAGAAACTAGAAAGTTCTACAAATATTATTCGAAACTTGCCGGTTTTTCTACCAAAATAAGAAACACGACTCGGGATGGAGACAAGATTAAGAATCAACTAATTGTATGTACCAGAGAGGGCAGGTGGAAATCTAAGATATCTCCAACTTTGAAGATAAATCCTTCAGCCGGGTTGAACTGTCCAGCTAGGATTTACGTACACATAATGAAGGATGTTGGTCTTTGGACAATTTCCAAAGTTGTTCTGAATCACTCACATCCTTGCTGTCCAGATCGGGCAGAGATGCTCAAACAACACAGGGAGCTTAGCATGTTTGTGCGGCTGTACAAGGATCGGCATATATGGATTCCACTTTACCTAAATCACCACTTCTGCGCCGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCACTCATTTTTCAACAAGTTCATCACATGCAACACCTCTTTGAGACAATTCGTGAAGCAATACGACAATTGCCTAGCAAGTAGAGAGCAAAGAGAGAGAGAATTCGATGCTGCAGATTTTTACACTGTGATACCGTGTGCAACAAAATCAGCAATAGAGGCCCAGTTTCAACATGTCACAATTCAGAGGAAAAGTGAACAGCATCACAAGATCAATGCATCCACCCTAGGTTTCAGAACATACGAAGTCGTAGAGCAGGTTTCTAACTCGACATTCAACAAGTTTTTAGTCACCTACGACGCAGTATCACGAGAGGTAAAGTGCCAGTGCTTGCTGTTCGAGTCAAGGGGCATATTGTGCCGCCATTCCCTGAACATCCTAAGCTTCGAGCGAGTGGATAACGTGGCACCGAGATACATACTGGAACGTTGGAGCAAGAATATAAAGAGGAGGCACACACACATCAAGAGCAGCCAAGATGAGCCTTTACTGGAGCCGAGAAGTAAAAGATTGGATGACTTTGTGTTTCGGTCGCACAATATATGCGAATTTGCATCCCAGTTTGAGGAGTTGACCAGAATTCTGCATTGGGCGTTTGACAAGACAGTGGATCAACCATTTAGTCAAATTCCAGCCTTTACAATGCATCAGATATGA 1206 0.4262 MNDSTSNQLNDNDLVYSSETNDADETRCVVDEKFVPKVGMIFKTLEETRKFYKYYSKLAGFSTKIRNTTRDGDKIKNQLIVCTREGRWKSKISPTLKINPSAGLNCPARIYVHIMKDVGLWTISKVVLNHSHPCCPDRAEMLKQHRELSMFVRLYKDRHIWIPLYLNHHFCAGMRSTQRSESMHSFFNKFITCNTSLRQFVKQYDNCLASREQREREFDAADFYTVIPCATKSAIEAQFQHVTIQRKSEQHHKINASTLGFRTYEVVEQVSNSTFNKFLVTYDAVSREVKCQCLLFESRGILCRHSLNILSFERVDNVAPRYILERWSKNIKRRHTHIKSSQDEPLLEPRSKRLDDFVFRSHNICEFASQFEELTRILHWAFDKTVDQPFSQIPAFTMHQI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2704 401 PANTHER OS03G0843700 PROTEIN 15 143 - -
Amo17g2704 401 PANTHER OS03G0843700 PROTEIN 153 346 - -
Amo17g2704 401 ProSiteProfiles Zinc finger SWIM-type profile. 278 314 IPR007527 GO:0008270
Amo17g2704 401 Pfam FAR1 DNA-binding domain 50 135 IPR004330 -
Amo17g2704 401 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 143 IPR031052 GO:0006355
Amo17g2704 401 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 153 346 IPR031052 GO:0006355
Amo17g2704 401 SMART 26again6 289 316 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2704 Amo-Chr17 127451628 127458167 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g2704 FAR1 5.1e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2704 - - adu:107484182 429.869