Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2670 ATGTTAATTGAGATGGGTTCTTGTGGGGATTCAGCTATGGTTGATGATGGAATATCAGGTGGGTCTGTTATTGAGCAGCATTTGTGCTCAGAGATTCCCGTGCATTCGGATCATTTGCAGAAACAGTTGTGTTCAGAAGGAGCTTGTAGTGTGTTGTACTCTGATGAGCTTAGCAGCTTGAAGGATGGCAGTGTGGATTTACCCCAGGAGGGTTCTGCAAGCGGRGGTGCTGTTGTTGRYGATGTTGAGCTTCACAGGGCGAAGGATGGAAGTGTGGATTTACCCCAGGAGGGCCCTGAGGGTTCTKRAAGCGGCGGTGCTGTTGTTACGGATGTTGAGCTTCACAGGGCGAAGGGTAGTGTGGATTTACCCCAGGAGGGCCCTGAGTGTTCTACAAGCGGCAGTGATGTTCCGGACAGGTGTGGAGATGTCTTGCCAAATGAATGTGGAAACGCTGATATGTTGCAATTGGAGAACACCTCTGAGCATGATTGTCAGAATCATTCAAGGATATGTTGTGGGAACAATGAGGGTTCAGGTCTAAAAACTAGGGGGATGTGTTCGGAAAGAAATTTTCAAGATGAAGGCAACTCAGACATTCCGTCGGAGTCCGTAACTGTGACTGGGTTGCAGGAGCATTGTGTTCAACACGTCGTGCAGAAGGATGAGAAGCTCAATGTATTCCCCTCAGTGAATGATGATTCAGCTGTCATGGGAGGCAAAAATGATGACTCCAGTGTACTTGTGGATGCTTTGGATTGTGTGCATGATTTCAGACATTCTGAAATGTCCTTGGAATCAGAACCCACGACTGACTTGCTAGTTGGTTGTGACCACAAAAATGAGCAGGGGGACATTGTGAGAAATGCAGATCCATTGTCAATGGGTGTGGAAAAATGTGATGCTTTTGATGGGATGGAATCCGATGCTTGCAGGCAGGCATCTCCTTTGCAGATGCAGGCTTTGGAAGTTCCAACAYCTGTATGTACAGAGGAAGATAGCAGACGTGGTCAGCTATGTGATGTTAAATATGGTGATGATTGGAATAGTAGTATTGATGAAAAGATTAAAGCTTTTGTAGATAAGGAAAACATTGTTGATTCACATGTCCAAGTATTGTCCTCACCAGGCTGTCATAGGACCTTGGAGAGTTCACCTGTAGTTGATTCCCCTCCGGAGACTTCAGTGTTGGTCCAGGGTAATGTAATGAAGAATGATATCTTGCAAATAGATGAGAAGTTGTGTAAATTGAAGGACTCTCACTCAGAAGAAACTACCAGCTGTGCTCCTAGGAAACCTTTATATGCTGATTTAGATCGGCCCTCCATTGTTTTAGTCACCGATACCTCTTTGAAGGACACACATGATCTGCTTCCTAAGGGTGGTGTTGTTTCTGTCAATAACAGTAGTGCTATGGACACTGTTGGACAGACAGATAATGATGGAAAAGATACTGTGGAAGCTGATTTTTTCGCTCAAAGCATCCTATTGCCGTCTCAGAGGAATAGTAGAAGAAATAAAGTTGGTCGTAAGACACAAACAAAAAAAGCCTCAAGAAAATGCAACAAAGCTGATTTGACACATCCAGGTGGAGATATGAAGATAAACTTAGAGGTTGCTAGAAAGAAAAGAAGTTCTTTCTCCAAGCCCGCACGATCTTCTATCTGGGGATTGCTTGGGAGCATTGAACAATATTTTGAGCAAGATAATGAGCTTGGGATTAGTAAAGCCATGTGCCAAGAATTGGGGAATACTAGAAGCAAGCGTCAAGCAGGAAAAGCATTTAAGAACAGTGCAAGTTCTAGTTCTTCAAATGCAGGGCAGAAATGTCCAGTTCCAACAACTCGGGTCCGTCTAAAGATCAAGTTTGGGAAAGAAATTGATCTAAGTAGTTCAAATATTTTGATTCCAGAAATTGGCAATGCCTTTAATCCTGCTTCTGACATGGGGACTGGTTCAGGTTCTCAYAAAGTTGGAAGCAATGCYGAAGACAAATCTTTGGGACRGGTGTCCTTGGGCAATTTAGAAACCTTCAAAAGCAACCTCAAGAAGGATGATCTTGTACTAAATGCGCAAATTGCAACAAACCACTTAGAAAGTACTGCAAAAATTGAGAAGTCAAATGGGGATGTAGAGGCAAAGTTTCTTACAAATCCTCTAGAAAAGGTGGTAGAACCATTGATTGAACCAATCATTAATATGGATCCTGGAACTTCACCTGATTCAGAAGTCATCAATTCAGTTCCAGAAGTTCAAGTTGGAGAAAGACATCAAGAAGATATGCATCATGCTCTTTTAGGTCCTCCTTTGGATTTCAATTCTAATTTGCATATTACTATTAGCAAGAAGGGGAAGAAAAAAGACAAACATATTTCTTCAAGTGATTGTATTACTGAAGTTGGATCACATGGGCGACATAGAAGTAATAAAGCAAAACAATCAAAGAATCACAGATGTAAGAAGAATTCTAGTAATACAGTTAGCTRTTTYGAATTGCCTGCTTCCACTGAGATAAATGCTTCAAGCAAATCTATRAGTAGTGAAGAATTTCCGACAGAACCATTACCCCTTTCTGGTGAGAGTGAACTTGGAGACTCTGCTGAAGCTTTGAAGGTCCAAGGGTGCAAGCCATCTGTTAACCACAGGCCATCAGAACCCCSGGGTTCTGAGAATSTGCCYCCTTGTGTAAGATATTTGGGGCGTAAACTACCTAAAAGCCTTATGAGTGTTAAAMTTAGCAAGGCCAAGTCTAAAGCTTCTGACTCAACAAAGAAAAAGATCACTTGTAGACACAAGGAGAAACAGAGAAGGCCAAATAGTAAAAGCGAAGTCAAGGGAAAAGGTGGCCCGCATAAAGTTARGMCAGAAGTGGAGGATCACATACATACAGCAACCAGCACAGTTGGAAATGGCAAATTGGATGCTGATCAAAGATTTAATGCTGATGYAAACAGAGTATCAGTTAATGTATCTAATTTGAACATATTGCCCACCATTGATTCGGGAGAGCAGCATAAATCACCACATAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGCATTCCAGCTGTGCTTGCTGACCTGATTGATGAGACAAACTGCACCTGGACATGCAAGGATAGCAAGGATAAAGACTTTGCTGATTGTGCTATCCCTCAGGAAAAGTCAAATGCAGAGATTAATGCAGAATTGGGATTATCAGATGAAGAAGATGCTTACGAAGATTCCAGAAATTATAAGGAATTGTTATACCAACAGCCATTGGTTTCCCAGGAGTCAACTTTCACCCAAGTCCTTTCCAATGAGTTTCTACATCGTAGCCGTAAAACACAAACTATTGACGAGATAATGGTCTGCCATTGCAAACAACCTCAAGTAGGCAAGTTAGGCTGTGGGGATGAATGCCTAAACCGGATGCTAAACATSGAATGCGTTCAAGGAACCTGCCCATGTGGGGATTATTGTTCCAACCAGCAGTTCCAAAAACGCAAGTATGCCAGCTTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGAGAATATAGCCCAAGGCCAGTTTCTCATTGAATATGTTGGGGAGGTGCTTGATACTCATGCTTATGAGGCACGGCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAATGGAAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGCCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGAACAGAAAAGTGGATGGTGAATGGGGAAATATGTATTGGACTGTTCGCATTGAGGGATATTAAGCAGGATGAAGAAGTGACATTTGATTACAACTATGTAAGGGTTTTRGGTGCTGCTGCCAAAAAATGCTATTGTGGCTCAATTAATTGTCGAGGTTATATAGGTGGTGGTGATCCGTTAAATTCCGATTTGATAGTTCAAGGTGATTCTGATGAAGAATTTCCAGAACCTGTTATGCTTAATGATGATGGCGTAATTGAAAACGGGTTGCTTTCACGCAAGTTTACTATTGCGATAGACACAGATAATACTCCAGAGAAGGAGAGTTCTATGAACCCTTCCTCTGCTGTTGATTTGTTGCACAGCTCCATTGAAGAAAATTCAAAGGCCAAGGTACCATCTTCTGTTCGCGTTGAAGAAATTTCTCAACTAGTGGAGAATACAGAAAGTAAAACCATGCCTGCTATGCAACAAGGGCATGCAATCGATCTTACGGACAAAACTACCTCCATTCAGAAAGATGAGAAACTTTCTTCCCTTGCACCTGTCAGAAAAGTRTTATTGAATGCTACCATCAGTAATAAGGAATTTAAGCCTGAAATAGTCAAGGCTCCTAAACTGGTTAGTTCTGTTAAAAGGGGAAAAGTTTGTGCTAATCCTCCAAACGGCCTCAAAATTGAGACASCAGTGAACCGATTGCAGTTGTCATCTGGGAAACTGAAAAAAGTTGTTGAAGGTTCTTCTAATGCAAGATTTGAAGCAGTCCAGGAGAAGCTTACGGAATTACTCGATGGAGATGGAGGAATAAGCAAAAGAAAAGATGCCACCAAAGGTTACTTGAAACTCTTGCTTCTCACTGTGGCATCAGGTGATAGGAGCAGCGGTGAAGCCATTCAAAGCAATCGAGATCTCTCAATGATCCTTGATGCCCTTCTYAAAACGAAATCTAGAGCAGTGCTAAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAAAATCATGAAGCAGTACAGGCGGGATTTCAAAAAAATTCCAATATTACGAAAGCTGCTTAAGGTGCTAGAGTATCTGGCTGTGGGCAAGATACTGACATTTGAACATATCAATGGTGGTCCCCCATGTCATGGAATGGAGAGCTTTAGGGAATCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTACATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCTAGGGCATCCAGAAAACATGGATATATGGACAGGGATGATAATAGAATGGAATCTCATAGAAGTTACAACAGTAACAGATTTTCATCATCACACAATCATAGGCATGAACAGGACTCTAGACCTACAGAAGCAGTGGATTGTGTTCCYATGTCAARATCCGTGGAAACTTCAGCTGATGCTGGTGCACCTGAGGGATCCTCCGCYCCCTCTCTAGATGGGGTTGATGTCAAAGGGACAAAAAAACGAAAGCGCAAAAGCCGGTGGGATCAACCAGCAGAGACAAATTCTTATTCCGATGCAGCAGTTATTGGTTCTACTGATGGAAGCCYGAACATTCATGAGGARGTTCCYCCAGGATTTTCTTGTCCCGTAGGTGCTGGTGATCTTGCTCCGCGAAATGGAGTCCATTCTGGAAGTGCCCCTGACTTGGTTTTTGGTCAGCCAAAGGAGAAATTTAACTCTCGCTTGCCTGTCTCATATGGAATCCCTTGCTCTGTTGTCAAGCAATTCGGAACACCTCATGCTGAGATCTCGYGTAGTTGGGTCACTGCACCTGGAATGCCTTTCAACCCATTTCCTCCYTTACCACCATATCCACGGGATCAAAGAGACTGTTTACCTTCCAATACTTCCAGCGCTATGGAAATTGATCAGCCATCTGAAATCAAACAGTCAGATGGTAGTGGCCTAGTTAACAGTTGCGCAGACGATACTGTTCGCAGCACAACTGGCACTAACTCTGATGACATGAATCATACAGATGAGGAGAATCGAAACATAACTAAGCGATTGAAGGACGATGACCTGGGAAGGAGGTACTTTAGACAGCAGAAGTGGAACAATTCGAAAATACATCGACCTTGGTTCCGGAGYGATGCATGGAAATGCAATAATAGGAACAACACCAGTGGTGGTGATATGTGTGGTATGGGTGTAGGAAATGTACAATCSGAAGTTACAAGAAGCTCAGAGGATGCAATTTGTAGAGATGAGAAAGGTGGCAAATAA 6003 0.4225 MLIEMGSCGDSAMVDDGISGGSVIEQHLCSEIPVHSDHLQKQLCSEGACSVLYSDELSSLKDGSVDLPQEGSASGGAVVXDVELHRAKDGSVDLPQEGPEGSXSGGAVVTDVELHRAKGSVDLPQEGPECSTSGSDVPDRCGDVLPNECGNADMLQLENTSEHDCQNHSRICCGNNEGSGLKTRGMCSERNFQDEGNSDIPSESVTVTGLQEHCVQHVVQKDEKLNVFPSVNDDSAVMGGKNDDSSVLVDALDCVHDFRHSEMSLESEPTTDLLVGCDHKNEQGDIVRNADPLSMGVEKCDAFDGMESDACRQASPLQMQALEVPTXVCTEEDSRRGQLCDVKYGDDWNSSIDEKIKAFVDKENIVDSHVQVLSSPGCHRTLESSPVVDSPPETSVLVQGNVMKNDILQIDEKLCKLKDSHSEETTSCAPRKPLYADLDRPSIVLVTDTSLKDTHDLLPKGGVVSVNNSSAMDTVGQTDNDGKDTVEADFFAQSILLPSQRNSRRNKVGRKTQTKKASRKCNKADLTHPGGDMKINLEVARKKRSSFSKPARSSIWGLLGSIEQYFEQDNELGISKAMCQELGNTRSKRQAGKAFKNSASSSSSNAGQKCPVPTTRVRLKIKFGKEIDLSSSNILIPEIGNAFNPASDMGTGSGSHKVGSNAEDKSLGXVSLGNLETFKSNLKKDDLVLNAQIATNHLESTAKIEKSNGDVEAKFLTNPLEKVVEPLIEPIINMDPGTSPDSEVINSVPEVQVGERHQEDMHHALLGPPLDFNSNLHITISKKGKKKDKHISSSDCITEVGSHGRHRSNKAKQSKNHRCKKNSSNTVSXFELPASTEINASSKSXSSEEFPTEPLPLSGESELGDSAEALKVQGCKPSVNHRPSEPXGSENXPPCVRYLGRKLPKSLMSVKXSKAKSKASDSTKKKITCRHKEKQRRPNSKSEVKGKGGPHKVXXEVEDHIHTATSTVGNGKLDADQRFNADXNRVSVNVSNLNILPTIDSGEQHKSPHNAWVRCDDCHKWRRIPAVLADLIDETNCTWTCKDSKDKDFADCAIPQEKSNAEINAELGLSDEEDAYEDSRNYKELLYQQPLVSQESTFTQVLSNEFLHRSRKTQTIDEIMVCHCKQPQVGKLGCGDECLNRMLNXECVQGTCPCGDYCSNQQFQKRKYASLKWFKCGKKGYGLKALENIAQGQFLIEYVGEVLDTHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVLGAAAKKCYCGSINCRGYIGGGDPLNSDLIVQGDSDEEFPEPVMLNDDGVIENGLLSRKFTIAIDTDNTPEKESSMNPSSAVDLLHSSIEENSKAKVPSSVRVEEISQLVENTESKTMPAMQQGHAIDLTDKTTSIQKDEKLSSLAPVRKVLLNATISNKEFKPEIVKAPKLVSSVKRGKVCANPPNGLKIETXVNRLQLSSGKLKKVVEGSSNARFEAVQEKLTELLDGDGGISKRKDATKGYLKLLLLTVASGDRSSGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHKIMKQYRRDFKKIPILRKLLKVLEYLAVGKILTFEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRASRKHGYMDRDDNRMESHRSYNSNRFSSSHNHRHEQDSRPTEAVDCVPMSXSVETSADAGAPEGSSAPSLDGVDVKGTKKRKRKSRWDQPAETNSYSDAAVIGSTDGSXNIHEEVPPGFSCPVGAGDLAPRNGVHSGSAPDLVFGQPKEKFNSRLPVSYGIPCSVVKQFGTPHAEISXSWVTAPGMPFNPFPPLPPYPRDQRDCLPSNTSSAMEIDQPSEIKQSDGSGLVNSCADDTVRSTTGTNSDDMNHTDEENRNITKRLKDDDLGRRYFRQQKWNNSKIHRPWFRSDAWKCNNRNNTSGGDMCGMGVGNVQSEVTRSSEDAICRDEKGGK* 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2670 2000 PANTHER SET DOMAIN PROTEINS 499 1929 - -
Amo17g2670 2000 Pfam AWS domain 1132 1166 IPR006560 GO:0005634|GO:0018024
Amo17g2670 2000 Gene3D - 1002 1063 - -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 588 611 - -
Amo17g2670 2000 Pfam SET domain 1180 1286 IPR001214 GO:0005515
Amo17g2670 2000 MobiDBLite consensus disorder prediction 783 952 - -
Amo17g2670 2000 Gene3D SET domain 1064 1317 IPR046341 -
Amo17g2670 2000 ProSiteProfiles Zinc finger CW-type profile. 1006 1060 IPR011124 GO:0008270
Amo17g2670 2000 MobiDBLite consensus disorder prediction 1853 1921 - -
Amo17g2670 2000 SMART PostSET_3 1294 1310 IPR003616 -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 788 806 - -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 936 952 - -
Amo17g2670 2000 CDD SET_SETD2 1168 1310 IPR044437 GO:0010452|GO:0046975
Amo17g2670 2000 SMART shorttest3 1117 1168 IPR006560 GO:0005634|GO:0018024
Amo17g2670 2000 MobiDBLite consensus disorder prediction 1869 1913 - -
Amo17g2670 2000 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 499 1929 - -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 1673 1790 - -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 820 851 - -
Amo17g2670 2000 ProSiteProfiles SET domain profile. 1169 1286 IPR001214 GO:0005515
Amo17g2670 2000 ProSiteProfiles AWS domain profile. 1117 1167 IPR006560 GO:0005634|GO:0018024
Amo17g2670 2000 SUPERFAMILY SET domain 1108 1307 IPR046341 -
Amo17g2670 2000 MobiDBLite consensus disorder prediction 1756 1770 - -
Amo17g2670 2000 ProSiteProfiles Post-SET domain profile. 1294 1310 IPR003616 -
Amo17g2670 2000 Pfam CW-type Zinc Finger 1012 1058 IPR011124 GO:0008270
Amo17g2670 2000 MobiDBLite consensus disorder prediction 88 138 - -
Amo17g2670 2000 SMART set_7 1169 1292 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2670 Amo-Chr17 126952639 126967878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2670 1152 1309 C2H2 Transcription Factor Family AT2G23740 33.702 1.06e-20 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo17g2670 SET 6.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2670 - - adu:107460691 3826.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2670 17 126952639 126967878 Amo17g2670 17 126952639 126967878 ECH
Amo08g0684 08 12095923 12115867 Amo17g2670 17 126952639 126967878 hybridization