Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2642 ATGATGGAATGCATGGCTGTGCACTCATCAAAGCAGCAGTATTCTCTTCTGCTGTTACTTCTACTAGTACTTGTTGTAGGGATCCTTTTGGAAGAAGCTAATGCAGAAAAATGCAAAAGAAAATGTGGGTCTCTTAGTATTCCGTTCCCTTTCGGCACCACGGAGGATTGCTCTCTGGACGCTTCTTTTCTGATTGATTGCAAGACCAAGAAGAACACTCCATACTTGCCGCAAACTAACTTAACTGTGCAGAGCATCTCCCTCAACGGCCAACTCCGCGTTTCTTTTCCGGTAGCCAGTTTTTGTTACACCCGCAACGGTACCAACCAAACTAATCAGCAACACAACCTCACATATTTCACCGTCTCACCCACTCAAAACAAGCTCTTTGTTGTTGGTTGTAACACAATTGGAGCAGTGAATGCATATGATTCAGAGGGTAAGAAGTACTTCACAGGGTGCTTGGCATTGTGCAACACGCCCGACTATGCAACCAACGGGACGTGCACGGGAGTCGGTTGTTGCGAGATTCCGATCATGGCGGCGCAAGAGCTATCTAGCATGTTTTATGTTTCTCTYCGTGCCTTCACTAGCAACAGCTAYGTCAGCAGTTTCAACCCCTGCAGTTATTCTTTTGTGGCGGAAGACGGAGCCTACAAGTTCTCCTCCGCGGATCTTGCCAAGTTCCACCATGCCACGTTTCCAACGGTGCTGGATTGGAGTGTGWGAAACWTGACTTGCCAACAAGCCAAGAAGAACAAGAATCATGATTTTGCGTGTAAGGCTGAGAATAGTGAATGTGTCAATGCAAAGGAACATGGTTATCTATGCAATTGCTCTGCTGGTTTTAATGGAAATCCTTATGTCCTTAATGGTTGCCAAGATGTGAATGAATGCATGGAATCCAACGATTGCTACAGTAAAGCAATTTGCCACAACGTTCCTGGTAGCTATAGCTGCTCCTGTCCAAAAGGTTACATAGGAGATGGCAAAAAATATGGAACACAATGCCGACCCAATTCCAGTTCCAATTCTAGAGCAAAGAACATTTTGATAATTGCATTGAGTATTAGTGGAGGCGTGATAGCACTACTTGTGGTGAGTTTTTATGTGTATTGGAGAATGAAGGAAAAGAAACTAATCAAACTTAAAGAACATTATTTTCAGCAAAATGGTGGCCTATTGTTACAACAACTCATTGCTAGACAAAGAGAATCAACTGATGAAACAGCTAAAGTTTTCACTGTGGATGAACTTAACAAGGCCACTAACAACTTTGATGAGAACAAGATCCTTGGTAAAGGGGGTCAGGGAACTGTTTATGAAGGACTACTATCAGATAACAAGACTGTAGCAATTAAAAGGTCCAAGATCAGTGACCCAAGTCAAATTGAACATTTCATCAATGAGGTTGTTGTACTCTCCCAAATCAACCATAAGAATGTGGTTAAACTTTTGGGTTGCTGTTTAGATGCACAAGTTCCATTGCTTGTTTATGAGTTCATTCCCAATGGTACTATTTYTGAGCATCTTCATAGTCATAACCATTCCTTAAGACTTTCTTGGAAAACAAGATTGAGAATAGCAGCAGAAACTGCTGGGGCTTTAGCTTACTTGCATTCTGTTACTTCTCCTCCAATCATACACAGAGATGTCAAAACTACTAACATACTTCTTGATCATGATCTTGTAGCMAAGGTTTCRGATTTCGGAGCTTCCAGAATTGTTCCTCTTGATAAGACACAATTAACCACATTGGTGCAGGGGACATTAGGGTATCTTGATCCTGAATACTTCCAAACAAGTCAACTAACCGAGAAAAGTGATGTGTATAGTTTCGGAGTTGTTCTGGTAGAGTTACTAACRGGACGAAAGGCGCTCTCTTTCGAAAKGCCGGAGAATGATAGAAACCTTGCATTGTACTTCATTTCTGCAATGAAAGGAGGGAATTTACTTGACATTGTGGACAACCATGTAATGAATGAGGCAARGGTTGAGCAAATAATTGAATTTGCTARTGTTGCAAAACGTTGTTTAAGAGTGATGGGKGAGAGAAGGCCTACAATGAAAGAAGTRGCAATGGAGCTTGAGGGACTTAGAGTTGAGGAGAAGCATAGAGGAGAAAGTGTGAAGTTGTATTCAGAAGAGACAGAGGAGTTGCTTAAATCAACAGTATCTACTTGCATTGTTGAAGATGTTAATAGTAGCATTGGTCAGATTTCAATGTCATTGAGTGGTGGAAGATGA 2247 0.4143 MMECMAVHSSKQQYSLLLLLLLVLVVGILLEEANAEKCKRKCGSLSIPFPFGTTEDCSLDASFLIDCKTKKNTPYLPQTNLTVQSISLNGQLRVSFPVASFCYTRNGTNQTNQQHNLTYFTVSPTQNKLFVVGCNTIGAVNAYDSEGKKYFTGCLALCNTPDYATNGTCTGVGCCEIPIMAAQELSSMFYVSLRAFTSNSYVSSFNPCSYSFVAEDGAYKFSSADLAKFHHATFPTVLDWSVXNXTCQQAKKNKNHDFACKAENSECVNAKEHGYLCNCSAGFNGNPYVLNGCQDVNECMESNDCYSKAICHNVPGSYSCSCPKGYIGDGKKYGTQCRPNSSSNSRAKNILIIALSISGGVIALLVVSFYVYWRMKEKKLIKLKEHYFQQNGGLLLQQLIARQRESTDETAKVFTVDELNKATNNFDENKILGKGGQGTVYEGLLSDNKTVAIKRSKISDPSQIEHFINEVVVLSQINHKNVVKLLGCCLDAQVPLLVYEFIPNGTIXEHLHSHNHSLRLSWKTRLRIAAETAGALAYLHSVTSPPIIHRDVKTTNILLDHDLVAKVSDFGASRIVPLDKTQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGRKALSFEXPENDRNLALYFISAMKGGNLLDIVDNHVMNEAXVEQIIEFAXVAKRCLRVMGERRPTMKEVAMELEGLRVEEKHRGESVKLYSEETEELLKSTVSTCIVEDVNSSIGQISMSLSGGR* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2642 748 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Amo17g2642 748 CDD EGF_CA 295 329 - -
Amo17g2642 748 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2642 748 Gene3D Laminin 245 298 - -
Amo17g2642 748 ProSiteProfiles Protein kinase domain profile. 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2642 748 Gene3D Laminin 299 339 - -
Amo17g2642 748 SUPERFAMILY Protein kinase-like (PK-like) 410 696 IPR011009 -
Amo17g2642 748 ProSitePatterns Calcium-binding EGF-like domain signature. 295 320 IPR018097 GO:0005509
Amo17g2642 748 Gene3D Transferase(Phosphotransferase) domain 1 502 721 - -
Amo17g2642 748 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 34 730 - -
Amo17g2642 748 SUPERFAMILY EGF/Laminin 294 332 - -
Amo17g2642 748 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 730 IPR045274 GO:0007166
Amo17g2642 748 ProSiteProfiles EGF-like domain profile. 295 338 IPR000742 -
Amo17g2642 748 Pfam Wall-associated receptor kinase galacturonan-binding 38 93 IPR025287 GO:0030247
Amo17g2642 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Amo17g2642 748 Pfam Calcium-binding EGF domain 295 337 IPR001881 GO:0005509
Amo17g2642 748 CDD STKc_IRAK 432 699 - -
Amo17g2642 748 SMART egfca_6 295 338 IPR001881 GO:0005509
Amo17g2642 748 Gene3D Phosphorylase Kinase; domain 1 397 501 - -
Amo17g2642 748 SMART egf_5 246 294 IPR000742 -
Amo17g2642 748 SMART egf_5 298 338 IPR000742 -
Amo17g2642 748 Pfam Protein tyrosine and serine/threonine kinase 429 696 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2642 Amo-Chr17 125883568 125887321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2642 5 742 Receptor kinase-like Gene Family AT1G21230 43.867 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo17g2642 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2642 - - aip:107607783 1458.74