Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2626 ATGGTAGTACAACTAGTAGCTATACTAACTTTTTTGCAGCATATGCTAAACACTCAACTAAACCGCCCCATGGCTGAGCATTTATCAAAGAAGAAACTCCTTTTCCTCATTTTCTTTTTAGCAGCTCATGCTAATGATGCAGCAACTCAACCCGCCAAACATTGCCTTACCAAATGCGGCCACGTCAGCATTCCCTTCCCGTTTGGCACCACAATGGATTGCTCCCTTGACACCAATTTTCTCATAAATTGCACCAACAATGTTCCATACTTTCCCTTACCAACAAACAATAGAGCCCTAACTCTCCTAAGCATATCCCTGGACGATGCCGAACTCCGCGTTCCGTCGCCGGTAGCTAGCGATTGCTATAGCATCGTCCAGGGAAAACTCAGCCACACTGAAATCGATTACTTTTTTATATCAGGAAGCTTTAGCATCTCATGGACCCGAAACACGTTCACCACAATCGGTTGTAACACACTTGGATTAGTTGTGGGGTATAACAATTTTTCAGCGGAAGAACCGAGACCTTATCCCACAACATGCTTCTCCTTCTGCAACAAACTCCAATATGCGAGTAATGGGTCCTGCACCGGCAGTGGTTGCTGCCGTATTATGATTGACTTCAACCCATGTGGTTATGCGTTCTTGGTGGAAGAAGGTGGCTATGAATTTGAGACGACACACCTGAAGAAGCTGGAGAGTACTGAGTTTCCGGTGGTTCTGGATTGGAGTGTAGGGAACCAAACGTGTATTGAAGCTATGAAGAATCCTTCCAGCTTTGCGTGTAAGGCAGAGAGCAGCACGTGTCACGATTCTGATAAGCGTTCTGGTTATGTTTGCAAATGCCCCTCTGGATTTCAGGGTAACCCTTACCTCCTTCATGGTTGTCAACAAGATGTTGATGAATGCGGGGGAACCAATGATTGCTTCCATGAAGCAAAATGCCAGAACATACCTGGCGGCTACAATTGTTTGTGTCCGGAGGGATTTGAAGGAGACGGGAGAAACAACGGAACTCGATGTACTAGTCCCGACCCCAGTGATAGGACAAAGATCACTTTGATTTATTCATTATGTTTGGGCATCAGCATAGGCATCTTAGCATTAGTTGTGGCAAGCTTTTATGTGCATTGGAAAGTGAACAAAAAAAAGCTCATCAACCTTAAAGAACAGTATTTTCAACAAAATGGCGGTTCGTTGTTGCAAGAACATATAGCTAAACATAGCAGCTCAAGCCAAATAGCCAAAGTCTTCACTATTGAGGAACTAAGGAAGGCAACCAACAACTTTGATGCAGGCAAAATCCTAGGCCAAGGGGGCCAAGGAACAGTTTACAAAGGAGTATTATCAGATAATATAACTGTAGCAATAAAAAAGTCCAAAATTAGTGACGCAAGCCAAATTAAGGACTTCATCAATGAGTTAGTTGTACTCTCACAAATCAACCATAGGCATGTGGTTAAGCTCTTGGGTTGTTGCTTAGAAACAGAAATTCCCTTGCTTGTTTACGAATTCATTCCCAATGGTACTGTTTTTGAGCATCTTCATGGTCATGAACCATTTTTAAGACTTACATGGAAAACAAGATTGAGAATAGCTGCTGAAACTGCTGGGGCATTAGCTTATTTGCATTTGGATACTTGTATCCCTGTAATCCACAGAGATGTGAAAACTAGCAATATTCTACTTGATCATGATCTCACTGCAAAGGTTTCTGATTTCGGTGCTTCAAGAATTGTTCCTCAAGGTAAAACTGAGTTAGCCACTTTGGTGCAAGGAACTTGGGGGTATCTTGATCCAGAATCATTTCTCACAAGCCAATTAACAGATAAGAGTGATGTCTATAGTTTTGGAGTTGTTCTTGCAGAATTACTTACAGGAAGAAAAGCGCTTTCTTTTGACATGCCGGATGCTGAAAAGAACCTTGCAATGTTCTTTGTTTCTTCAATGAAAGAGAATCGTTTGCTTCATATTGTAGATAAGGGCATAATAAATGAAGCAAAGGTTGAGCATGTATATGAATTTGCCAAGATTGCAAAACAGTGTTTAAACTTGAAAGGAGAAGAAAGACCTACAATGAAAGAAGTGGCAATGGAAATTGAGGGGATTAGAGCTGAGGAAAAACATAGATGGTGGTGGGAGAAGGAGAAATTGTCCTCTGAAGAAACTGAAATCCTGTGTATCACTACACAAAAAACGGCAGATTACGGCGGATTTTTAGCGGTGATTATTGAAAACCGTCGTCAAATGAGATATTGCGGCTGTTGA 2271 0.4183 MVVQLVAILTFLQHMLNTQLNRPMAEHLSKKKLLFLIFFLAAHANDAATQPAKHCLTKCGHVSIPFPFGTTMDCSLDTNFLINCTNNVPYFPLPTNNRALTLLSISLDDAELRVPSPVASDCYSIVQGKLSHTEIDYFFISGSFSISWTRNTFTTIGCNTLGLVVGYNNFSAEEPRPYPTTCFSFCNKLQYASNGSCTGSGCCRIMIDFNPCGYAFLVEEGGYEFETTHLKKLESTEFPVVLDWSVGNQTCIEAMKNPSSFACKAESSTCHDSDKRSGYVCKCPSGFQGNPYLLHGCQQDVDECGGTNDCFHEAKCQNIPGGYNCLCPEGFEGDGRNNGTRCTSPDPSDRTKITLIYSLCLGISIGILALVVASFYVHWKVNKKKLINLKEQYFQQNGGSLLQEHIAKHSSSSQIAKVFTIEELRKATNNFDAGKILGQGGQGTVYKGVLSDNITVAIKKSKISDASQIKDFINELVVLSQINHRHVVKLLGCCLETEIPLLVYEFIPNGTVFEHLHGHEPFLRLTWKTRLRIAAETAGALAYLHLDTCIPVIHRDVKTSNILLDHDLTAKVSDFGASRIVPQGKTELATLVQGTWGYLDPESFLTSQLTDKSDVYSFGVVLAELLTGRKALSFDMPDAEKNLAMFFVSSMKENRLLHIVDKGIINEAKVEHVYEFAKIAKQCLNLKGEERPTMKEVAMEIEGIRAEEKHRWWWEKEKLSSEETEILCITTQKTADYGGFLAVIIENRRQMRYCGC* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2626 756 Pfam Wall-associated receptor kinase galacturonan-binding 55 114 IPR025287 GO:0030247
Amo17g2626 756 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Amo17g2626 756 SUPERFAMILY Protein kinase-like (PK-like) 410 706 IPR011009 -
Amo17g2626 756 CDD STKc_IRAK 437 704 - -
Amo17g2626 756 SMART serkin_6 431 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2626 756 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Amo17g2626 756 SMART egfca_6 300 343 IPR001881 GO:0005509
Amo17g2626 756 SMART egfca_6 251 298 IPR001881 GO:0005509
Amo17g2626 756 SUPERFAMILY EGF/Laminin 299 336 - -
Amo17g2626 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Amo17g2626 756 Gene3D Laminin 248 342 - -
Amo17g2626 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 40 731 - -
Amo17g2626 756 ProSiteProfiles EGF-like domain profile. 300 343 IPR000742 -
Amo17g2626 756 Gene3D Transferase(Phosphotransferase) domain 1 507 726 - -
Amo17g2626 756 SMART egf_5 303 343 IPR000742 -
Amo17g2626 756 SMART egf_5 250 298 IPR000742 -
Amo17g2626 756 CDD EGF_CA 300 334 - -
Amo17g2626 756 Pfam Protein tyrosine and serine/threonine kinase 433 699 IPR001245 GO:0004672|GO:0006468
Amo17g2626 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 40 731 IPR045274 GO:0007166
Amo17g2626 756 ProSiteProfiles Protein kinase domain profile. 431 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2626 756 Gene3D Phosphorylase Kinase; domain 1 395 506 - -
Amo17g2626 756 ProSitePatterns Calcium-binding EGF-like domain signature. 300 325 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2626 Amo-Chr17 125673735 125677413 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2626 33 712 Receptor kinase-like Gene Family AT1G21230 44.366 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Amo17g2626 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2626 - - ahf:112765693 1371.3