Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2618 ATGGAGGATTCTTCTAATAATAACAATACTTGTGACGACAGTAAGATTTGTCCCCGCGGTCACTGGCGACCCGCCGAGGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCTCAGAATTGGAATTCCATTGCTGAGAAACTTCAAGGAAGGTCAGGGAAAAGTTGTAGATTAAGGTGGTTCAATCAGCTAGATCCAAGAATCAACAGGAGGCCATTCACGGAGGAGGAGGAAGAGCGGTTGCTGGCGGCGCACCGCATTCACGGCAATAAGTGGGCCCTGATAGCGAGGCTATTTCCGGGAAGAACAGATAACGCCGTCAAGAATCACTGGCACGTGATCATGGCAAGAAAGCAAAGAGAGCAATCCAAGATTTGTGGCAAAAGAACCTTCCAAGACATGATGATTTTCAATAACAACAACGATTCCAATTCTTCTTCTTCTTCCAGTAACATCATCAAGAGACCAGCAAGAGTAATCGGGTTAGAATATTCCAGATTCTTCGATTTCCGCAACCTCGATAGCAATAAAGCTTCTACTTCTTGGAATTTCGCATCTTCTGTTCCGCCAACAGTAACTGATTCTTTTAGAAAAGGAGGAGGGGGAAAAGACTATTTCACCATCAACGGTTCCAATATTTATCTTCCAGAAGGTTCTAGAACCTCCGATAGATTCTATTGCAGAGTTTTCCCGGGTCCTTCTACTACTACTACTGCTACTACTGCACCATTTGGTTCCTCTAATGGATTCTCATCATCGCTCCAAAACTACAAGAGGATCGTTCCGAATCCCTTCGCCTTCAAGGGTAGTTCTACGGAGAAGGAGAAAGAAGAAGATCATGAACCTAAAAATGAAGTTCCTTTCATTGATTTTTTGGGCGTCGGTGTCTCTTCTTCGTAG 903 0.4408 MEDSSNNNNTCDDSKICPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKICGKRTFQDMMIFNNNNDSNSSSSSSNIIKRPARVIGLEYSRFFDFRNLDSNKASTSWNFASSVPPTVTDSFRKGGGGKDYFTINGSNIYLPEGSRTSDRFYCRVFPGPSTTTTATTAPFGSSNGFSSSLQNYKRIVPNPFAFKGSSTEKEKEEDHEPKNEVPFIDFLGVGVSSS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2618 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Amo17g2618 300 ProSiteProfiles Myb-like domain profile. 19 65 IPR001005 -
Amo17g2618 300 PANTHER TRANSCRIPTION FACTOR MYB56 6 298 - -
Amo17g2618 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Amo17g2618 300 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Amo17g2618 300 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Amo17g2618 300 SMART sant 18 67 IPR001005 -
Amo17g2618 300 SMART sant 70 118 IPR001005 -
Amo17g2618 300 Gene3D - 19 70 - -
Amo17g2618 300 CDD SANT 22 63 IPR001005 -
Amo17g2618 300 Pfam Myb-like DNA-binding domain 22 82 - -
Amo17g2618 300 Gene3D - 73 133 - -
Amo17g2618 300 PANTHER MYB PROTEIN-RELATED 6 298 - -
Amo17g2618 300 CDD SANT 82 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2618 Amo-Chr17 125548690 125549890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2618 16 126 MYB Transcription Factor Family AT1G17950 82.883 2.18e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g2618 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2618 K09422 - gmx:100817328 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0556 08 10177221 10178337 Amo17g2618 17 125548690 125549890 hybridization