Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2617 ATGTCATTAGTTAGATCAGCAGAGCTTGCTCCTACACCGTATAAAAGCGCGAAGCTATACTCGCTAAAGGAAACTGATGTTAGACCAGGATTATCATCRCAAATCTTTGATGCTGACAAGCATAGAAACATGCACATGACAGATACTTACTCGAGCGAGAGTTACGAAAAGTACTTCCACGAATCGCCTTCAGAAGAGCTGATAGAACCGTGTAGTTCTGGAATCTATAGTCCAATTCACATTGATGGTGCCTCTTCATACCAGTTCAGATCCAGTTCAGAAGCTTCTTTGGTTGCTAACAACACTTTGGGTACCTCTTTTGTGTCTGAATTTGGATCAGGTTTTTCAGAAATTGGCAACCTGGATGATCAAGGACTAATGAGATCAAGGCTTAAGGCACTGGAGAGAAGATTGCTGGGTCAAAGTGATGGCGAGGAGGAGGAGGAGGAAGAGGACATGTTTGGGACTTCTCAAAACATGGAAATCGAGCAGGATATTTCTGAATGGGCTGATTCCATTCAGAATATGCTGCTCCAAGACTCTCCGAAGGAGACTTCGTCTTCGGATTCAAGTCTTAGTAGCAGCATCAGCAGCAACAAAGAAATGTCAGCAATTCCTCAAACTCCTAGGCAAATGCTCCTTGATTGTGCGGTTGCGCTTTCGGAGGGGAATCAAGAAGCAGCATCGTCTATGATCAATGATCTACGCCAAAAGGTATCGATTCAGGGAGAGCCTTCCCAAAGAATTGCAGCCTATATGGTGGAGGGTCTTGCAGCTCGCTTGGCRGAATCCGGGAAATGCATTTACAAAGCACTGAAATGCAAGGAAGCTCCTTCTTCAGACCGTCTAGCAGCAATGCAGATACTCTTTGAGGTCTGTCCATGCTTTAAATTTGGATTTGTCGCCGCAAACAATGCAATTACAGAGGCAGTTAAAGATGCAAGAAAGGTTCATATAATAGATTTTGACATAAATCAAGGGAGTCAGTACATAAATCTAATACAAATTCTTGCTTCAAGATCAAGGAAGCCTGTCCATGTTAGATTGACTGGGGTTGATGATCCAGAATCTGTTCAAAGATCTGTTGGAGGCCTACAGATCATAGGACAAAGACTTGAAAAACTAGCCGAAGCACTCGGCTTACCATTCGAGTTTCAAGCAGTGCCATCAAGGACTTCCCTTGTCACTCCATCAATGCTTAATTGTCYTCCGGGCGAAGCACTCGTGGTAAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGCGTTTCGACTGTTAACGAGCGTGATCAGCTCCTTCGCCTTGTGAAGAGCCTGAATCCGAAGCTTGTCACGGTTGTGGAGCAAGATGTGAACACRAACACTACTCCTTTCTTGCCAKGATTTGTTGAGGCRTACAATTACTACTCGGCTGTGTTCGAGTCGCTTGATGTTACTCTTCCAAGAGATAGTCAGGACAGGATGAATGTGGAACGCCAATGCCTGGCGAGGGACATTGTGAACATCGTGGCATGCGAAGGCGAGGACAGGATAGAACGGTACGAGGTTGCCGGGAAATGGAGGGCTAGGATGACAATGGCTGGGTTCACTTCAACACCAATGAGCAAAAATGTGAGTGATGAGATAAGGAAAATGAATAAGATGCATTATTATGACAAGTACAATGTGAAGGAGGAGAAGGGTGCTCTTCATTTTGGTTGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAGGTAA 1743 0.4458 MSLVRSAELAPTPYKSAKLYSLKETDVRPGLSSQIFDADKHRNMHMTDTYSSESYEKYFHESPSEELIEPCSSGIYSPIHIDGASSYQFRSSSEASLVANNTLGTSFVSEFGSGFSEIGNLDDQGLMRSRLKALERRLLGQSDGEEEEEEEDMFGTSQNMEIEQDISEWADSIQNMLLQDSPKETSSSDSSLSSSISSNKEMSAIPQTPRQMLLDCAVALSEGNQEAASSMINDLRQKVSIQGEPSQRIAAYMVEGLAARLAESGKCIYKALKCKEAPSSDRLAAMQILFEVCPCFKFGFVAANNAITEAVKDARKVHIIDFDINQGSQYINLIQILASRSRKPVHVRLTGVDDPESVQRSVGGLQIIGQRLEKLAEALGLPFEFQAVPSRTSLVTPSMLNCXPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPXFVEAYNYYSAVFESLDVTLPRDSQDRMNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMTMAGFTSTPMSKNVSDEIRKMNKMHYYDKYNVKEEKGALHFGWEDKNLIVASAWR* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2617 580 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 579 IPR005202 -
Amo17g2617 580 Pfam GRAS domain family 210 580 IPR005202 -
Amo17g2617 580 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 579 IPR030011 GO:0003700|GO:0005634
Amo17g2617 580 ProSiteProfiles GRAS family profile. 200 580 IPR005202 -
Amo17g2617 580 MobiDBLite consensus disorder prediction 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2617 Amo-Chr17 125501250 125504573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2617 1 580 GRAS Transcription Factor Family AT1G21450 59.396 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo17g2617 GRAS 1.9e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2617 - - gmx:100798897 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2617 17 125501250 125504573 Amo17g2617 17 125501250 125504573 ECH
Amo08g0559 08 10278574 10282305 Amo17g2617 17 125501250 125504573 hybridization