Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2607 ATGTCTAACACTGCTGGTCAAATCATCAAGTGCCGAGCTGCGGTTGCATGGGAGGCAGGGAAGCCATTGGTGATTGAAGAAGTGGAGGTTGCGCCACCTAAGGCCGGTGAAGTCCGTTTGAAGATTCTCTACACCTCACTTTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTATTTCCTCGGATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGAGAGGGAGTGACTCATCTGAAACCAGGTGACCATGCCCTCCCTGTGTTCACCGGAGAGTGTGGCGAATGCCCTCACTGCAAGTCAGAGGAGAGCAACATGTGTGACCTTCTCAGGATCAACACTGACAGGGGTGTCATGATCCATGATCAAGAATCAAGATTCTCCATTAAGGGAAAACCAATTTACCACTTTGTTGGGACCTCCACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGAAGCACCACTTGACAAAGTTTGTGTTCTCAGCTGTGGAATCTGCACAGGTCTTGGTGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCTGTTTTTGGACTCGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTCGAATTAGCTAAGAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATCATAACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGCGTGGATCGTTCTGTTGAATGTACTGGCAGCATCCAAGCTATGATCTCAGCATTTGAATGTGTCCACGATGGTTGGGGTGTTGCTGTTCTTGTTGGTGTGCCAAGCAAAGACGATGCTTTCAAAACTCATCCTACGAACTTCTTGAATGAGAGGACTCTCAAGGGTACCTTCTATGGTAACTACAAACCCCGAACCGATCTTCCTAATGTTGTGGAGAAGTACATGAGAGGGGAGTTGGAACTTGAGAAATTCATCACTCACACTGTTCCGTTCTCAGAGATTAACAAGGCTTTTGATTTGATGCTGAAAGGAGAGTCCATCAGGTGCATCATTCGGATGGACGAATAA 1143 0.4654 MSNTAGQIIKCRAAVAWEAGKPLVIEEVEVAPPKAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDQESRFSIKGKPIYHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCVLSCGICTGLGATINVAKPKPGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPTNFLNERTLKGTFYGNYKPRTDLPNVVEKYMRGELELEKFITHTVPFSEINKAFDLMLKGESIRCIIRMDE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2607 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Amo17g2607 380 Gene3D - 19 370 - -
Amo17g2607 380 CDD alcohol_DH_plants 9 377 - -
Amo17g2607 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Amo17g2607 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Amo17g2607 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Amo17g2607 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Amo17g2607 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Amo17g2607 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Amo17g2607 380 Gene3D - 183 321 - -
Amo17g2607 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2607 Amo-Chr17 125370209 125373964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2607 37 370 Monolignol Biosynthesis Gene Families AT1G72680 25.223 2.76e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2607 K18857 - gmx:100783858 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3373 13 111661686 111664687 Amo17g2607 17 125370209 125373964 ECH
Amo17g2607 17 125370209 125373964 Amo17g2607 17 125370209 125373964 ECH
Amo08g0574 08 10486526 10489221 Amo17g2607 17 125370209 125373964 hybridization
Amo16g3905 16 150829915 150831099 Amo17g2607 17 125370209 125373964 PCT
Amo17g2607 17 125370209 125373964 Amo16g3905 16 150829915 150831099 PCT