Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2559 ATGGACAAGAAGTTATGCCTCTTGTTCATTTTCTCAGCATCAATTTTGTTCATTGTTGGAGCTGAGCCAGTGGAAGATAAACAAGCCTTGCTTGATTTCCTTCACAACATGAACCACCCTTATAATCTCAACTGGAATGAGAATTCTTCTGTATGCACAAGCTGGAGAGGAGTAACATGCAACGCCGGCCGGTCCAGAGTTATCGCGCTCCGGTTGCCAGCGGCCGGATTAAGTGGTCAAATCCCAAACAACACTCTTGGTCAACTTTCAGCGCTTCAGATTCTGAGTCTTCATTCAAATGGTATAACTGGTCCTTTCCCTAATGATTTCTCTGAGCTGAAGAACTTAACAAGCCTCTATCTCCAATCCAACAAGATTTCTGGCCCTCTGCCATTGAATTTCTCAGTTTGGAATAGTCTTACAATATTGAATTTATCTAACAACTTTTTCAATGGTACCATACCTTTTTCAATTTCGAATATGACTCATCTTGAATCATTAATCCTTGCCAACAATTCACTTTCTGGTGAAATACCAGATCTCAACATTCCTAGTCTCAAAGAGCTTGATTTGGCAAACAATAATCTTAGTGGTGTTGTTCCTAAATCCCTTCTTAGATTTCCAATTAGAGACTTTGCTGGTAACAATAATCTTACCTATGGAAATGCCCTTTCACCTGCAATTCCCCTGCAACCGCCCAATGATCAACCAGCTAAGAAGAAACACATCAGGATCAGCGAGCAAACGCTGTTGGCTATCATAATTGGTGCTTGTGTGCTTGGATTTGCTGTGGTTGCAGCCTTCATGATTGCGTGCATGTATGAGAAAAGCAACGAAAATGAGCTACCCGTTGAGTCCAAGAAAAAAGAAGTTCCTCTGAAGAAGCAATCTTCTGATAGCCAAGAGTCTCAGGACAAGAACAAGATTGTGTTCTTTGAAGGTTGCAGTCTTGCATTTGACTTAGAGGATCTACTGAGAGCTTCTGCTGAGATTCTAGGAAAGGGGACATTCGGCATGACATATAAGGCTTCTCTAGATGAGAATACCACAGTGGTGGTGAAGAGGTTGAAAGAGGTTACAGCTGGAAAAAGAGAATTTGAACAGCAAATGGAAATTGTGGGGAGAATTAAGCATGACAATGTGGATGCATTAAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTTCTATCAACAAGGCAGCGTTTCTGCATTGTTGCATGGAAAAAGAGGGGAAGGAAGAATCCCTTTAGACTGGGAGAGCCGTCTAAGAATCGCAATAGGCGCAGCAAGAGCCATTGCTCACATCCATGCTCAACACGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATACGGTTGTGTATCGGACACTGGTTTGGCAACCCTGATGAGTCCATTGCCTGCACCTGCAACACGTGCTGCTGGATACCGTGCCCCAGAAGTAACTGACACCCGAAAATCAACACATGCATCTGATGTCTATGCTTTCGGGGTCCTAGTACTCGAGCTTCTGACAGGGAAGTCACCAGTACCTGCTGCCGGAGGCGAGGAAGTTATGCATTTGGTTAGATGGGTGAATTCTGTGGTCAGAGAAGAATGGACTGCAGAGGTGTTTGATGTGGAGCTTCTGAGGTATCCAAATATAGAGGAAGAAATGGTGGAGATGCTGCAAATAGGGATGGCTTGTGCCTCAAGAATACCGGATCAGAGACCGAAAATGACAGAGGTGGTGAGAATGATGGAGGAAATTCGTCGTGTAAACACTGGAAATCCACCTTCCACTGGATCTAGATCAGAAGTTTCTACTCCAACAACTTATGCAGTTGACATGATGGTGGCTTCTACATCGGTCCCACAGTGA 1902 0.4364 MDKKLCLLFIFSASILFIVGAEPVEDKQALLDFLHNMNHPYNLNWNENSSVCTSWRGVTCNAGRSRVIALRLPAAGLSGQIPNNTLGQLSALQILSLHSNGITGPFPNDFSELKNLTSLYLQSNKISGPLPLNFSVWNSLTILNLSNNFFNGTIPFSISNMTHLESLILANNSLSGEIPDLNIPSLKELDLANNNLSGVVPKSLLRFPIRDFAGNNNLTYGNALSPAIPLQPPNDQPAKKKHIRISEQTLLAIIIGACVLGFAVVAAFMIACMYEKSNENELPVESKKKEVPLKKQSSDSQESQDKNKIVFFEGCSLAFDLEDLLRASAEILGKGTFGMTYKASLDENTTVVVKRLKEVTAGKREFEQQMEIVGRIKHDNVDALRAYYYSKEEKLIVYDFYQQGSVSALLHGKRGEGRIPLDWESRLRIAIGAARAIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCVSDTGLATLMSPLPAPATRAAGYRAPEVTDTRKSTHASDVYAFGVLVLELLTGKSPVPAAGGEEVMHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACASRIPDQRPKMTEVVRMMEEIRRVNTGNPPSTGSRSEVSTPTTYAVDMMVASTSVPQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2559 633 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Amo17g2559 633 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Amo17g2559 633 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Amo17g2559 633 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Amo17g2559 633 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515
Amo17g2559 633 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Amo17g2559 633 SUPERFAMILY L domain-like 27 207 - -
Amo17g2559 633 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2559 633 PANTHER LRR RECEPTOR-LIKE KINASE 10 624 - -
Amo17g2559 633 PANTHER OS05G0588300 PROTEIN 10 624 - -
Amo17g2559 633 Gene3D Ribonuclease Inhibitor 138 227 IPR032675 -
Amo17g2559 633 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
Amo17g2559 633 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Amo17g2559 633 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Amo17g2559 633 Gene3D Ribonuclease Inhibitor 25 137 IPR032675 -
Amo17g2559 633 SUPERFAMILY Protein kinase-like (PK-like) 330 595 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2559 Amo-Chr17 124437472 124440407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2559 15 618 Receptor kinase-like Gene Family AT4G23740 56.340 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo17g2559 PK_Tyr_Ser-Thr 9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2559 - - gmx:100809359 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0602 08 10829370 10832766 Amo17g2559 17 124437472 124440407 hybridization