Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2556 ATGAACAGCTACTGCTACGACAACAACGACGTCGTTATGGAACAAAGCAATAGCATCCTATGCAAATACACAGTTCACCGCACTGTCACTAACAAGTTCACCAAACACAACAAGAAATCCACCATAGAACCCAGAACGGTGCGTGTGTCTTACACCGATCCAGACGCCACTGACTCCTCCGCCGATGAAGCAGAACAACACTTCCTCTCTTCTTCTCGCAAGAGAGTAAAGCGTTACATCAACAGCATTCAAATCGAACCCGCTTCCACCAAGAACGCTGTCTCCGCCGCACACAATAAGAAAAGGGCTACTGCAAACGCTGGCGACGCTGCTGCTTCTTGCCGCCGGCCGGCCAAGGCTCCGGTGACCACTAACGGAGGGAGGAAGTTCCGCGGTGTAAGGCAAAGACCATGGGGGAAGTGGGCGGCGGAGATTAGAGATCCGGCGAGAAGAGTTCGTCTCTGGCTGGGAACCTACGACACGGCGGAAGAAGCTGCCATGGTTTATGACAATGCGGCCATTCAAATTCGTGGCCCTGACGCTCTCACAAACTTCATCACTCCACCGCAGCGCGGAGAACCACAGCCACAGCCAGAACCACAAGAAGAAGAAGAAGCAGAAACAACCACCGCCGTGAAACCAGAAATGAAGGTGGTTGTAACTGCAGAGGCTTCCGGCTCCGGGTCCGGCTACGACTCCGGTTCAGAAGATCACCGGTGTCTGAACCTCTCATCCCCAACCTCAGTTCTCCAATTCAGAAGCAGCGAAACGGAATCGTCAGAGCAAGCAAAGAAACAGTCGTTCCTCCATTGTAGTAGTGATGACGTGTCAGGTTCAGGTTCAGTTTCAATGGAAGAAGTATTCGGAGAGTGCCAAGGCGAAACGAGCTTGTTCGAGGAGACTGGTGAGTTCTTGGGTTTGGAAATGATGCCGGTTTGGGATGAGGTGTTCGATTTCCAAACGCCGCAGTACCCAGTGATGTTCGAGGAGGAAGAAGAGAAAGGGTTATTTGGGGAAACAAAGACGACGTCGTTTTGGTGCGCAGAAGAGGATCAAGAATTAAGCATGGAGAACTATAACAGTAGCATTGTTCTGGCTGATTCACTCATCGATTTCGAGAAGGCTTGTAATCCAACTCCAACTCCATCATCTAGCTTTTGCCAAATGGACGATGATTACTTCCAAGATATTTTGTTGGCTTCTGATCCTCTCGTCCTTCTATAA 1224 0.5041 MNSYCYDNNDVVMEQSNSILCKYTVHRTVTNKFTKHNKKSTIEPRTVRVSYTDPDATDSSADEAEQHFLSSSRKRVKRYINSIQIEPASTKNAVSAAHNKKRATANAGDAAASCRRPAKAPVTTNGGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQIRGPDALTNFITPPQRGEPQPQPEPQEEEEAETTTAVKPEMKVVVTAEASGSGSGYDSGSEDHRCLNLSSPTSVLQFRSSETESSEQAKKQSFLHCSSDDVSGSGSVSMEEVFGECQGETSLFEETGEFLGLEMMPVWDEVFDFQTPQYPVMFEEEEEKGLFGETKTTSFWCAEEDQELSMENYNSSIVLADSLIDFEKACNPTPTPSSSFCQMDDDYFQDILLASDPLVLL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2556 407 MobiDBLite consensus disorder prediction 104 131 - -
Amo17g2556 407 CDD AP2 129 185 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 Pfam AP2 domain 129 178 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 SUPERFAMILY DNA-binding domain 129 185 IPR016177 GO:0003677
Amo17g2556 407 Gene3D AP2/ERF domain 128 187 IPR036955 GO:0003700|GO:0006355
Amo17g2556 407 MobiDBLite consensus disorder prediction 182 213 - -
Amo17g2556 407 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 19 400 - -
Amo17g2556 407 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Amo17g2556 407 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2556 Amo-Chr17 124393429 124395375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2556 21 300 AP2-EREBP Transcription Factor Family AT4G27950 41.639 1.61e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo17g2556 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2556 - - adu:107460630 734.176