Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2533 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTATTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGCTTCCTTTTTCTGAGCTGCTGAACATGACTCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGAGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTGATGCAACTTGCTAAAGTCAAACTATTCCTCTGTTGCTGTGTAGGCCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTAATCTTCCTGAAGTTGTTGAATTCAGGCAGAGGTTAGGATGTTTTATTTTTATGGTTGAGCAAGGTGTCAACGGTACCCAGCCACTCTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACGATTATTGCCATGTTTGAGCTTCCCGATTATGATGCTGATGATGAGTCAACCCCAAAAAAGGAGGCTGATTTACACAAATCTGTTCCATGTGGAAGTGGTGATATTGGTGTTAAGAAGGATTTATCAAAGAATTTTATTAAAAGTGAGGAAATTTCTGGTGAGACTGAGTTTGCTCCGTTAATTAATGGTGAACATGGAAAAGATGACAAAACACCCAGCAGTGACACTGTTAGTGATGATCTTTCTGCTAAAATAGATATATTGCTTAGCTCACCAGAAAAAGAAATTCAGGTGCTATTATATAATATTTTTTCCCTCCTTCCTATGTGTGAGGTGTTGTCCCATGTTATTGATGCACCTTCCAAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCCGCTGTTGATGGAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1527 0.3877 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTIVAIDEDVIPKTCFNMLPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIVLELSSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVMQLAKVKLFLCCCVGQVGLQNVMYATQMLFNPNLPEVVEFRQRLGCFIFMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNELVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKEADLHKSVPCGSGDIGVKKDLSKNFIKSEEISGETEFAPLINGEHGKDDKTPSSDTVSDDLSAKIDILLSSPEKEIQVLLYNIFSLLPMCEVLSHVIDAPSKYGEKLIHENDVVTSKGKRNLNPQFEEAAVDGDGRGFKIAKVNGV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2533 508 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 295 - -
Amo17g2533 508 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo17g2533 508 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Amo17g2533 508 SUPERFAMILY Nucleic acid-binding proteins 120 247 IPR012340 -
Amo17g2533 508 MobiDBLite consensus disorder prediction 403 417 - -
Amo17g2533 508 MobiDBLite consensus disorder prediction 399 419 - -
Amo17g2533 508 CDD RPA1_DBD_A_like 19 107 - -
Amo17g2533 508 Gene3D - 114 247 IPR012340 -
Amo17g2533 508 Gene3D - 4 112 IPR012340 -
Amo17g2533 508 CDD RPA1_DBD_B_like 140 246 - -
Amo17g2533 508 PANTHER REPLICATION FACTOR A 1, RFA1 22 295 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2533 Amo-Chr17 123724150 123727035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2533 8 243 Core DNA Replication Machinery Family AT2G06510 26.829 1.44e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2533 - - adu:110280586 582.408