Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2530 ATGCCAATTAGATACTCCTACAAAGAAATCAAGAACATAACTGAAAAGTTCAAGACTAAACTAGGAAATGGAGGCTATGGCTCTGTCTTCCAAGGAAAACTTCGAAGCGGTCGTCTAGCAGCTGTTAAGGTATTGAATGAGGCCAAATCCAATGGCCAAGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTGGTGCAACTCATTGGTTTCTGTGTGGAGGGATCAAAGCGTTGTTTGGTATATGAGTTAATGCAGAATGGCTCTTTAGAAAAATACATATTTTCACCTCAAGACAGTGCTTCCTTAAGTTGTGAAAAACTCTATACCATTTCCCTTGGAGTGGCACGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAAATTCTGCACTTTGACATCAAACCTCACAACATTCTTTTGGATGAAAACTTCAATCCAAAAGTCTCTGACTTTGGACTTGCAAGGCTATCTCCCACTGATAAAAGCATTGTGTCTCTGACTGCAGCAAGAGGAACCATAGGGTATATGGCTCCTGAGCTCTTCTACAGAAATGTTGGCGCAATCTCGTACAAAGCCGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGGAAGAATTTGAATGCACTGAATGAAAATTCCAGCCAGATATATTTTCCCTTTTGGGTTTATGATGAATTGCAGGATGGAAGGGAAATAACAATAGAAAATGACACAGATGAAGAGATGAAGTTGGCTAAAAGAATGATGATTGTGGCATTGTGGTGTATACAGACAAAGCCTAATGATCGACCTTCAATGAAGAAAGTTGTGGAGATACTTGAACAAGACGATGACTTAGAAATGCCTCCAAAACCATACTTCTACCCACTTAATGCACCCAGAGAAGAGAATGTTGAACATACCACAACTCATAGCAGTTCATCACTTTCCTCTGACATGTCGTCAGTTAGTGATTCAAAGGAATAG 1002 0.3952 MPIRYSYKEIKNITEKFKTKLGNGGYGSVFQGKLRSGRLAAVKVLNEAKSNGQEFINEVATIGRIHHVNVVQLIGFCVEGSKRCLVYELMQNGSLEKYIFSPQDSASLSCEKLYTISLGVARGIEYLHNGCDMKILHFDIKPHNILLDENFNPKVSDFGLARLSPTDKSIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNALNENSSQIYFPFWVYDELQDGREITIENDTDEEMKLAKRMMIVALWCIQTKPNDRPSMKKVVEILEQDDDLEMPPKPYFYPLNAPREENVEHTTTHSSSSLSSDMSSVSDSKE* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2530 333 MobiDBLite consensus disorder prediction 314 333 - -
Amo17g2530 333 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 302 IPR045874 GO:0004672
Amo17g2530 333 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Amo17g2530 333 SUPERFAMILY Protein kinase-like (PK-like) 3 286 IPR011009 -
Amo17g2530 333 SMART serkin_6 15 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2530 333 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 3 302 - -
Amo17g2530 333 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Amo17g2530 333 Gene3D Transferase(Phosphotransferase) domain 1 90 297 - -
Amo17g2530 333 Pfam Protein kinase domain 18 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2530 333 MobiDBLite consensus disorder prediction 295 333 - -
Amo17g2530 333 PIRSF ILK 5 291 - -
Amo17g2530 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Amo17g2530 333 ProSiteProfiles Protein kinase domain profile. 15 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2530 Amo-Chr17 123705683 123706684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2530 4 300 Receptor kinase-like Gene Family AT5G38280 50.825 4.60e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2530 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2530 - - aip:107605930 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2530 17 123705683 123706684 Amo17g2530 17 123705683 123706684 ECH