Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2529 ATGTGTTCATCCCGGTGGTGTGGGAGGCATGAGATAAGGTACCCTTTCAGGCTGAATAATAGTAGTCCAAGCCATTGTGGTGATCACAGGTACACCCTCTCCTGCGAGAATGATAACCAACTCTTTCTCTATCTCACATCAATCAAGTTCCAAGTACAGTCAATTAACTACAACAACTACACAATCCGACTAGTAGATTCCAATGTTGCGCTGCATACCCATAATAATCACTCTTCTCTCCTTCCTTATTCTTTAACCTCCTCTAGTTTCAGCAGTGCCAAAGATGAACCATATAATGATCGGTTCTATAACCAGCATCATTTAGTTGATGTTATTAGATTGACAAAGCAGATGGTATATTTGATGAGGTGCCCACCATATGGAGTAAAATCTTCTTCTGCTGCTGCAACTTGCATGAATGGATCTTATGCGCTTGGGAGTACATTATTCTATGTCAGTGATATTGATAAAAGTCTCCAGGATTTGGTGTTCGGAGACTCGTGTCATATAGAGTGGATGTATCTGATTTCATGGCCTGTTGAAATCAAACACAGAAATAATTCATGCACAGACATCCATCATATGCTGCTCTACGGGTTTGAACTTTCTTGGTTGAAAGTATATTGCAAGTATGAGGCCATCCTCAGTGATAGTAACAAAGTCATTTGTTATGATAAGCCTTCACTACTTATACATACAAGTTTCCTGTACTCAATGTATGTTGAGGCTCTAATGTATGGAACGGTTTTATTTATTCTTGCCAAATTTGCACTTGGAGCTCCATGCATCATTATCTTCTGCATATATAAATGGAGACGAAGGCATTTATCCATATATGACAATATCGAAGATTTTCTGCGAAGTGACAACAACATCATACCAATTAGATACTCCTACAAAGAAATCAGGAACATAACTGAAAAGTTCAAGACTAAACTAGGAAATGGAGGCTATGGCTCTGTCTTCCAAGGAAAACTTCGAAGCGGTCGTCTAGCAGCTGTTAAGGTATTGAATGAGGCCAAATCCAATGGCCAAGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTGGTGCAACTCATTGGTTTTTGTGTGGAAGGATCAACGCGTTGTTTGGTATATGAGTTGATGCAGAATGGCTCTTTAGAAAAATACATATTTTCACCTCAAGATAGTGCTTCCTTAAGTTGTGAAAAACTCTATACCATTTCCCTTGGAGTGGCACGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAAATTCTGCACTTTGACATCAAACCTCACAACATTCTTTTGGATGAAAACTTCAATCCAAAAGTCTCTGACTTTGGACTTGCAAGGCTATCTCCCACTGATAAAAGCATTGTGTCTCTGACTGCAGCAAGAGGAACCATAGGGTACATGGCTCCTGAGCTCTTCTACAGAAATGTTGGCGCAATCTCGTACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGGAAGAATTTGAATGCACAGATTGAAAATTCCAGCCAGATATATTTTCCCTTTTGGGTTTATGATGAATTGCAGGATGGAAGGAAAATAACAATAGAAAATGACACAGATGAAGAGATGAAGTTGGCAAAAAGAATGATGATTGTGGCATTGTGGTGTATACAAACAAGGCCTAATGATCGACCTTCAATGAAGAGAGTTGTGGAGATGCTAGAACAAGACGATGACTTAGAAATGCCTTCAAAACCATACTTCTACCCACTTGATGCACCCACAGAAGACAATGTTGAACATACCACAACTCATAACAGTTCATCACTTTCCTCTGACATCTCGTCAGTTAGTGATTCAAAGGAATAG 1878 0.3924 MCSSRWCGRHEIRYPFRLNNSSPSHCGDHRYTLSCENDNQLFLYLTSIKFQVQSINYNNYTIRLVDSNVALHTHNNHSSLLPYSLTSSSFSSAKDEPYNDRFYNQHHLVDVIRLTKQMVYLMRCPPYGVKSSSAAATCMNGSYALGSTLFYVSDIDKSLQDLVFGDSCHIEWMYLISWPVEIKHRNNSCTDIHHMLLYGFELSWLKVYCKYEAILSDSNKVICYDKPSLLIHTSFLYSMYVEALMYGTVLFILAKFALGAPCIIIFCIYKWRRRHLSIYDNIEDFLRSDNNIIPIRYSYKEIRNITEKFKTKLGNGGYGSVFQGKLRSGRLAAVKVLNEAKSNGQEFINEVATIGRIHHVNVVQLIGFCVEGSTRCLVYELMQNGSLEKYIFSPQDSASLSCEKLYTISLGVARGIEYLHNGCDMKILHFDIKPHNILLDENFNPKVSDFGLARLSPTDKSIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNAQIENSSQIYFPFWVYDELQDGRKITIENDTDEEMKLAKRMMIVALWCIQTRPNDRPSMKRVVEMLEQDDDLEMPSKPYFYPLDAPTEDNVEHTTTHNSSSLSSDISSVSDSKE* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2529 625 Pfam Protein kinase domain 310 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2529 625 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Amo17g2529 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 249 603 IPR045874 GO:0004672
Amo17g2529 625 SMART serkin_6 307 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2529 625 Gene3D Phosphorylase Kinase; domain 1 287 381 - -
Amo17g2529 625 MobiDBLite consensus disorder prediction 587 625 - -
Amo17g2529 625 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 3 212 - -
Amo17g2529 625 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 249 603 - -
Amo17g2529 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Amo17g2529 625 Gene3D Transferase(Phosphotransferase) domain 1 382 589 - -
Amo17g2529 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 212 IPR045874 GO:0004672
Amo17g2529 625 Pfam Wall-associated receptor kinase galacturonan-binding 2 66 IPR025287 GO:0030247
Amo17g2529 625 ProSiteProfiles Protein kinase domain profile. 307 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2529 625 MobiDBLite consensus disorder prediction 603 625 - -
Amo17g2529 625 SUPERFAMILY Protein kinase-like (PK-like) 289 578 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2529 Amo-Chr17 123679491 123683960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2529 7 589 Receptor kinase-like Gene Family AT5G38260 37.418 1.31e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2529 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2529 - - aip:107605930 1242.64