Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2523 ATGGATAGTTATTTGATCTTAGTCTCCACTTTCCTCCTTTCTTGCTTTGGTGTAGTTCATGTTGGCTCTAATAGTGATACTACCTGTCCGGATTTCTTGTGCGGAAATCAAGAAATTCGATTCCCTTTTAGAATCAAAGGCCGTCAGTCACAAAGCTGTGGCTATCCGGGCTTTGATTTGGTTTGCTCAGGTACTAGTGATGATGAGAAACTGTTTCTTGAGCTCCCTGAATCAGTGACCTTCAATGTCAAACACATTGACTATATAAAACAAACAATTGAATTAACCCCTCCATCTTCCTGCCTTCCAAAGCAGCTCCATAACCTCAGTAATATCTCTGTCTTAGTTTTCCCTTTCCAGCGCATGCTAGTTGAGGAGGGTGATGACTATCACTTCTTCAACTGTTCACCAGTGGCAATGGACACATATATAAACAATGACATCATGATTCCATGCCTAAGCAGCTCAACCAGTCAAGTATATGCCATTTCATCTTGGAATTCTATCCATGACCTGACAACCCTGTTTCCTTGCACCAAAATGTTCAATATTTCATCCCTCCCAGATGCACTTGTTCCAGCTCTGAAAGATACTCTTGTTTTGTTTTGGTCTGAACCAAGCTGTCAACAATGTGAATCGGAGGGCAAAAGGTGCAGCTGGAACAACAGCACCAAGAATCAACTTGATTGTCTTGCTAATGTCATCCACAGGGATTCATCAACAGCTCTAGTAACCACAATAGGATCAGTACTTGGATCGTTTTTGCTTGTCCTACTGACCGGAGCGATTTATTACATCTATGACTCTTGCATAATGCAAAAGGAAAAACAAGCAATTATTGAAAAATTTCTTGAAGATTACAGGGCTCAAAAACCAACCAGATATTCTTACACTGAAATCAAGAGAATCACCAACAACTTTGGGTACAAGTTAGGAGAGGGCGCCTATGGAACTGTCTTCAAAGGAAGCATCTCAAAAGAATTTCCTATTGCGGTGAAAATGCTGAATAATTCCCAGGGAAATGGGGAGGAGTTTGTRAATGAAGTTGGTATAATTGGTAGAATCCACCATGTCAATATTGTCCGGTTGGTTGGTTTCTGTGCTGATGGGTTCAGAAGAGCTCTTGTCTATGAATTCTTGCCGAATTCTTCGCTGCAGAAGTTCATAAATTTGCCCGACAACAAGCAAAACTTTTTGGGCTGGAAGAAGTTGCAAGAGATTGCTCTAGGTGTAGCTAAAGGAATTGAGTATCTTCACCAAGGTTGTGATCAACGCATTCTCCATTTTGATATCAAACCTCAAAATGTGTTGCTAGATCACAACTTTACTCCAAAAATTTGTGATTTCGGTCTAGCTAAATTATGCTCCAAGGATCAAAGTGTAGTGTCAATGACAGCAGCTAGAGGAACTTTGGGGTACATTGCGCCCGAAGTTTTCTCAAGGAACTTTGGAAATGTATCTTACAAGTCTGATGTTTACAGTTATGGAATGATGCTGCTAGAAACAATTGGAGGYAAGAAGATCACAGAGGATATAGAAGAAAACAGTAGCCATGTTTACTATCCAGAATGGATGCATAGTATTTTAGAAGAGACTGATGAAATCAGAATTCATATTGAAGATGAAGAAGATGCTAAAATTGCTAAGAAACTAGCAACAGTGGGACTTTGGTGCATCCAATGGCATGCAGTGGATCGACCATCAATGCAGACAGTGCTTCAAATGTTGGAGGGAGACCAAGACACASTACCAAASCCTCCTAATCCTTTTGCTTCCACAGGGCCTTCAAGAAAATATGCTAAAATTAGTGTGCCTGCAAGACAAATTACCCAAGATTTAGAAGTGATCCAAGAGTTAGATTAA 1863 0.402 MDSYLILVSTFLLSCFGVVHVGSNSDTTCPDFLCGNQEIRFPFRIKGRQSQSCGYPGFDLVCSGTSDDEKLFLELPESVTFNVKHIDYIKQTIELTPPSSCLPKQLHNLSNISVLVFPFQRMLVEEGDDYHFFNCSPVAMDTYINNDIMIPCLSSSTSQVYAISSWNSIHDLTTLFPCTKMFNISSLPDALVPALKDTLVLFWSEPSCQQCESEGKRCSWNNSTKNQLDCLANVIHRDSSTALVTTIGSVLGSFLLVLLTGAIYYIYDSCIMQKEKQAIIEKFLEDYRAQKPTRYSYTEIKRITNNFGYKLGEGAYGTVFKGSISKEFPIAVKMLNNSQGNGEEFVNEVGIIGRIHHVNIVRLVGFCADGFRRALVYEFLPNSSLQKFINLPDNKQNFLGWKKLQEIALGVAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFTPKICDFGLAKLCSKDQSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDIEENSSHVYYPEWMHSILEETDEIRIHIEDEEDAKIAKKLATVGLWCIQWHAVDRPSMQTVLQMLEGDQDTXPXPPNPFASTGPSRKYAKISVPARQITQDLEVIQELD* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2523 620 SUPERFAMILY Protein kinase-like (PK-like) 288 577 IPR011009 -
Amo17g2523 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Amo17g2523 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 619 IPR045874 GO:0004672
Amo17g2523 620 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Amo17g2523 620 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
Amo17g2523 620 PANTHER RECEPTOR-LIKE KINASE 31 619 - -
Amo17g2523 620 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Amo17g2523 620 Pfam Protein kinase domain 309 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2523 620 ProSiteProfiles Protein kinase domain profile. 305 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2523 620 MobiDBLite consensus disorder prediction 577 597 - -
Amo17g2523 620 Gene3D Transferase(Phosphotransferase) domain 1 380 584 - -
Amo17g2523 620 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2523 Amo-Chr17 123598259 123600885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2523 3 615 Receptor kinase-like Gene Family AT1G66910 34.488 3.77e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2523 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2523 - - mtr:MTR_1g031540 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2523 17 123598259 123600885 Amo17g2523 17 123598259 123600885 ECH
Amo08g0484 08 9086173 9088735 Amo17g2523 17 123598259 123600885 hybridization