Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2521 ATAGTGATTAGAGTGGGTAGTTATTTGAACTTAGTCTCCACTTTCCTCCTTGCTTGCTTTGGTGTAGTTCATCTTGCGCATGGCTCTAATAGTGATACTACCTGTCCGGATTTCTTGTGCGGAAATCAAGAAATTCGATTCCCTTTTAGAATCAAAGGCCGTCAGTCACAAAGCTGTGGCTATCCGGGCTTTGATCTGGTTTGCTCAGGTACTAGTGATGATGAGAAACTGTTTCTTGAGCTCCCTGAATCAGTGACCTTCAATGTCAAACACATCGACTATACAAAACAAACAATTGAATTAACCCCTCCATCTACCTGCCTTCCAAAGCAGCTCCATAACCTCAGTAATATCTCTGTCTTAGTTTTCCCTTTCCAACGCATGCTAGTTGAGGAGGGTGATGACTATCACTTCTTCAACTGTTCACCAGTGGCAATGGATACATATATAAACAATAACATCATGATTCCATGCCTAAGCAGCTCAACCAGTCAAGTATATGCCATTTCATCTTGGAATTCTATCCATGACCTGACAACCCTGTTTCCTTGCACCAAAATGTTCAATATTTCATCCCTCCCAGATGCACTTGTTCCAGCTCTGAAAGATACTCTTGTTTTGTTTTGGTCTGAACCAAGCTGTCAACAATGTGAATCGYAGGGWAAAAGGTGCAGCTGGAACAACAGCACCAAGAATCAACTTGATTGTCTTGRTAATGTCATCCACAYGGATTCATCAACAGCTCTAGTAACCACAATAGGATCAGTACTTGGATCGTTTTTGCTTGTCCTACTGACCGGAGCGATTTATTACATCTATGACTCTTGCATAATGCAAAAGGAAAAACAAGCAATTATTGAAAAATTTCTTGAAGATTACAGGGCTCAAAAACCAACCAGATATTCTTATACCGAAATCAAGAGAATCACCAACAACTTTGGGTACAAGTTAGGAGAGGGCGCCTATGGAACTGTCTTCAAAGGAAGCATCTCAAAAGAATTTCCTATTGCAGTGAAAATGCTGAATAATTCCCAGGGYAASGGGGAGGAGTTTGTRAATGAAGRTGGTATAATTGGTAGAATCCACCATGTCAATATTGTCKGGTTGGTTGGTTTCTGTGCTGATGGGTTCAGAAGAGCTCTTGTCTATGAATTCTTGCCGAATTCTTCYCTGCAGAAGTTCATAAATTTGCCCGACAACAAGCAAAACTTTTTGGGCTGGAAGAAGTTGCAAGAGATTGCTCTAGGTGTAGCTAAAGGAATTGAGTATCTTCACCAAGGTTGTGATCAACGCATTCTCCATTTTGATATCAAACCTCAAAATGTGTTGCTAGATCACAACMTTACTCCAAAAATTTGTGATTTCGGTCTAGCTAAATTATGRTCCAAGGATCAAAGTGTAYTGTCAATGACAGCAGCTAGAGGAACTTTGGGGTACATTGCGCCCGAAGTTTTCTCAAGYAACTTTGGAAATGTATCTTACAAGTKTGATGTTTACAGTTATGGAATGATGCTGCTAGAAACAATTGGAGGGAAGAAGATCACAGAGGATATAGAAGAAAACAGTAGCCATGTTTACTATCCAGAATGGATGCATAGTATTTTAGAAGAGACTGATGAAATCAGAATTCATATTGAAGATGAAGAAGATGCTAAAATTGCTAAGAAACTAGCAACAGTGGGACTTTGGTGCATCCAATGGCATGCAGTGGATCGACCATCAATGCAGACAGTGCTTCAAATGTTGGAGGGAGACCAAGACACASTAWCAASSCCTCCTAATCCTTTTGCTTCCACAGGGCCTTCAAGAAAATATGCTAAAATTAGTGTGCCTGCAAGACAAATTACCCAAGATTTAGAAGTGATCCAAGAGTTAGATTAA 1881 0.3977 IVIRVGSYLNLVSTFLLACFGVVHLAHGSNSDTTCPDFLCGNQEIRFPFRIKGRQSQSCGYPGFDLVCSGTSDDEKLFLELPESVTFNVKHIDYTKQTIELTPPSTCLPKQLHNLSNISVLVFPFQRMLVEEGDDYHFFNCSPVAMDTYINNNIMIPCLSSSTSQVYAISSWNSIHDLTTLFPCTKMFNISSLPDALVPALKDTLVLFWSEPSCQQCESXGKRCSWNNSTKNQLDCLXNVIHXDSSTALVTTIGSVLGSFLLVLLTGAIYYIYDSCIMQKEKQAIIEKFLEDYRAQKPTRYSYTEIKRITNNFGYKLGEGAYGTVFKGSISKEFPIAVKMLNNSQGXGEEFVNEXGIIGRIHHVNIVXLVGFCADGFRRALVYEFLPNSSLQKFINLPDNKQNFLGWKKLQEIALGVAKGIEYLHQGCDQRILHFDIKPQNVLLDHNXTPKICDFGLAKLXSKDQSVLSMTAARGTLGYIAPEVFSSNFGNVSYKXDVYSYGMMLLETIGGKKITEDIEENSSHVYYPEWMHSILEETDEIRIHIEDEEDAKIAKKLATVGLWCIQWHAVDRPSMQTVLQMLEGDQDTXXXPPNPFASTGPSRKYAKISVPARQITQDLEVIQELD* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2521 626 Pfam Wall-associated receptor kinase galacturonan-binding 35 101 IPR025287 GO:0030247
Amo17g2521 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Amo17g2521 626 SUPERFAMILY Protein kinase-like (PK-like) 294 583 IPR011009 -
Amo17g2521 626 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 625 IPR045874 GO:0004672
Amo17g2521 626 SMART serkin_6 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2521 626 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
Amo17g2521 626 Gene3D Transferase(Phosphotransferase) domain 1 386 591 - -
Amo17g2521 626 PANTHER RECEPTOR-LIKE KINASE 35 625 - -
Amo17g2521 626 ProSiteProfiles Protein kinase domain profile. 311 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2521 626 Pfam Protein kinase domain 315 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2521 626 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Amo17g2521 626 MobiDBLite consensus disorder prediction 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2521 Amo-Chr17 123544669 123547172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2521 36 621 Receptor kinase-like Gene Family AT1G66910 34.748 4.28e-107 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2521 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2521 - - mtr:MTR_1g031540 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2521 17 123544669 123547172 Amo17g2521 17 123544669 123547172 ECH