Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2518 ATGAAACCTGTCATGGTGGTGTGGGTGTTGGTGTTGGTGTTGGCCTTACTCCTATCTTGTGGAAACGGTTACAGCAGAGTAACGGATTCTGTTACGTGTTCCAGTCAGTGGTGCGGAACGCATAACATAAGCTATCCATTCACACTAACTAACACTCCACCTAACTGCGGTGATCCCACCTTCAACAACACWCTCTCTTGCGACAATCATAACCAACTCTTTCTTTACTTCAAATCACGAAAATTCTATGTTCAGTCTATTAATTACAACAACTCCACAATCCGATTAGTAGATTCCACCATTATTAATAATTCTTCTTATTTTCTGGCCTCCTATAATTTCAACTCTTACAAATCATATCAACACCATCACAAGCAGATTCTATACGTGACGTGTCCAAACGCGGTGGGATCCGAAGTTGATGACCCTCCTGCTGCAACTTGCATCAACGGTTCTTATGCGCGTGGAAGTAGCAGCTTCCATGTCTATGATGGTAACAAGACTTTGCAAGAGTTGGGACTGCAAGACACGTGTCGCGTAGAGTGGATGTATCCAAGTTCGTGGCCGGGTGAAATCGACGGTGGAAACATCTCTTGCGTAGATATCCGTACAATGCTGCTTTACGGGTTTGAAATTCCCTGGGGCTTGTGTTTTTGCCAACATGCTGTCTTCGATGATCAAAATAACAACCTTCGTTGTTTAAGTCAACACTCACCCACTCCTTTAGTGGAAGTCATTGGAGAATGGATATACTATATAATATTTTTCTTGGTTGGCAAATTCATGCTTGGAATTGCATTCGTCATCTTCTGCGAATGGCGACAGAAGAATTTAGGCACGTATTACACCATTGAAGATTTTCTGCGAAATAACAATGAAATCTTGCCATTTAGATACTCTTACAAAGACATCAAGAACATAACCAAAGGATTCAAAACAAAACTGGGAAATGGAGGCTATGGCTCTGTCTTTCAAGGAAAACTTCCAAGTGGTCGTCTTGTAGCTGTCAAAGTGTTGAATAACACTAAGACCAGATCTAATGAAGAAGAATTTATCAGTGAAGTTGCTACTATTGGTAGAATTTACCATGTCAATGTAGTGCAACTCATTGGTTTCTGTGTGGAAGGACTAACACGTGCTCTTATATATGAGTTAATGGAAAATGGGTCTCTAGAAAAGTACATATTTTCACATGAAAAAGGTGTTTTCTTAACTTGTGAAAAATTGTACAAAATTTCCCTTGGGGTGGCACGTGGCATCGAGTTCATGCATAATGGTTGTGACATGAAGATTCTGCATTTTGATATCAAGCCTCAAAACATTCTTCTTGATGAGAATTTCAATCCGAAAGTCTCTGATTTTGGACTTGCAAAGCTATGTCCCACTAGTGATAGCAAAGTGTCTTTGACTGCAGCAAGAGGAACTATAGGATACATGGCTCCTGAGCTATTCTACAGAAACATTGGAACAATTTCCGATAAAGCTGATGTCTATAGTTTTGGAATGTTGTTAATGGAGATGGCAAGTAGGAAAAAGAATCTAAATACATCGGCTAAAAATTCTAGCCAAATTTATTTCCCTTTCTGGGTTTATAATCAGTTACATGATGGAAGTGAAATTGTAATTGAAAATGACACAGATGAGGAGATGAAGTTGGCCAAAAAGATGATGATTGTGGCATTATGGTGTATACAAACAAAGCCTAGTGATCGTCCTTCAATGAAGAGAGTTGTGGAGATGCTAGAACAAGATGATGAAGAATTGGAAATATCTCCTAAGCCTTACATATATTCACATGATATACCTGCACAAGATGTTGGAGATTTTAGCACTTCAATGCTATTCTCTGATGTATCATCAGTTAGTGATTCTAAAAAAATTGTGTATTCCCCTTAA 1896 0.3903 MKPVMVVWVLVLVLALLLSCGNGYSRVTDSVTCSSQWCGTHNISYPFTLTNTPPNCGDPTFNNTLSCDNHNQLFLYFKSRKFYVQSINYNNSTIRLVDSTIINNSSYFLASYNFNSYKSYQHHHKQILYVTCPNAVGSEVDDPPAATCINGSYARGSSSFHVYDGNKTLQELGLQDTCRVEWMYPSSWPGEIDGGNISCVDIRTMLLYGFEIPWGLCFCQHAVFDDQNNNLRCLSQHSPTPLVEVIGEWIYYIIFFLVGKFMLGIAFVIFCEWRQKNLGTYYTIEDFLRNNNEILPFRYSYKDIKNITKGFKTKLGNGGYGSVFQGKLPSGRLVAVKVLNNTKTRSNEEEFISEVATIGRIYHVNVVQLIGFCVEGLTRALIYELMENGSLEKYIFSHEKGVFLTCEKLYKISLGVARGIEFMHNGCDMKILHFDIKPQNILLDENFNPKVSDFGLAKLCPTSDSKVSLTAARGTIGYMAPELFYRNIGTISDKADVYSFGMLLMEMASRKKNLNTSAKNSSQIYFPFWVYNQLHDGSEIVIENDTDEEMKLAKKMMIVALWCIQTKPSDRPSMKRVVEMLEQDDEELEISPKPYIYSHDIPAQDVGDFSTSMLFSDVSSVSDSKKIVYSP* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2518 631 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Amo17g2518 631 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 253 607 - -
Amo17g2518 631 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 222 - -
Amo17g2518 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Amo17g2518 631 CDD STKc_IRAK 315 583 - -
Amo17g2518 631 Gene3D Phosphorylase Kinase; domain 1 289 385 - -
Amo17g2518 631 SUPERFAMILY Protein kinase-like (PK-like) 292 582 IPR011009 -
Amo17g2518 631 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Amo17g2518 631 Pfam Protein kinase domain 312 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2518 631 ProSiteProfiles Protein kinase domain profile. 309 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2518 631 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Amo17g2518 631 SMART serkin_6 309 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2518 631 Gene3D Transferase(Phosphotransferase) domain 1 386 594 - -
Amo17g2518 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 253 607 IPR045874 GO:0004672
Amo17g2518 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 222 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2518 Amo-Chr17 123479054 123481582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2518 6 610 Receptor kinase-like Gene Family AT5G38260 36.578 4.35e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2518 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2518 - - aip:107605930 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2518 17 123479054 123481582 Amo17g2518 17 123479054 123481582 ECH