Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2517 ATGTGGACTACCAAGGTAACATATGCAGACAAAACAATGTGTTCACCTGGGTGGTGTGGGAGGCATCACATAAGGTACCCTTTCAGGCTGAATAATAGTAGTCCAAGCTACTGTGGTGACCACAGGTACACCCTCTCTTGCGAGAGTGATAACCAACTCTTTCTCTATCTCAAATCAATCAAGCTCAAAGTGCACTCAATTAACTACAACAACTACACAATCCGACTAGTGGATGCCAGTGTTGCCCTGCATACCCATGATCACTCTTCTCTTCTTCCTTATTCTTTGACCTCCTCTAATTTCAGCAGTGGCAAAGATGAACCATACCATGATTGGTTCCGTTACTTCCATAACCGGCATCTTGATCTTATTAGATTGACAAAGCAGATGGTATATTTGATGAGGTGCCCACCATATGGAGCAGAAGAATCTTCTTCTGCTTCTGCAACTTGCATGAATGGATCCTATGCACTTGGGAGTACATTCTATGTCAGTGATCTTGGTAAAAGTCTCCAGGATTTGGCGTTTGGAGACTCGTGTCATATAGAGTGGATGTATATGACTTCATGGCCTGCTGAAATCAAAGACAGAAATATTTCATGCACAGACATCCATCATATGCTGCTCTACGGCTTTGAACTTTCTTGGTTGAAAGTATATTGCAAGAATGATGCCATCCTCAGTGATCGTAACAAAGTCATTTGTTATAAGCCTGCACTTATACTTAAAAGTTATGTACTTTCATGGATTGTTATTTGTCTAGTGGACGGAACAATTTTATTTGTTCTTGCCAAATTTGTACTTGGTGCTCCATGCATTGTTATCCTCTGCATATATAAATGGAGACGAAGACATTTATCGATATATGACAGTATCGAAGATTTTCTGCGAAGTGACAACAACATCATGCCAATTAGATACTCCTACAAAGAAATCAAGAACATAACTGAAAAGTTCAAGACTAAACTAGGAAATGGAGGCTATGGCTCTGTCTTCCAAGGAAAACTTCGAAGCGGTCGTCTAGCAGCTGTTAAGGTATTGAARGAGGCCAAATCCAATGGCCAAGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAATGTGGTGCAACTCATTGGTTTCTGTGTGGAGGGATCAAAGCGTTGTTTGGTGTATGAGTTAATGCAAAATGGCTCRTTAGAAAAATACATATTTTCACCTCAAGAGAGTGCTTCAAATTCCTTAAGTTGTGAAAAACTGTACAACATTTCTCTTGGAGTGGCACGTGGTATTGAGTATCTGCATAATGGTTGCGACATTAAAATTCTGCACTTTGACATTAAGCCTCATAACATTCTTTTGGATGAGAACTTCAATCCAAAAGTCTCTGATTTTGGACTTGCGAGGTTATGTCCCACTGATAAAAGCATTGTGTCTCTGACTGCAGCAAGAGGAACCATAGGATACATGGCTCCTGAGCTTTTCTACAGAAATGTTGGCGCAATCTCGTACAAAGCCGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTAGTAGAAGGAAGAATTTGAATGCACAGACTGAAAATTCCAGCCGGATATATTTTCCCTTTTGGGTTTATGATCAATTGCATGATGGAAGGGAAATAACAATAGAAAATGACACGGCTGACGAGATGAAGTTGGCAAAGAAAATGATGATTGTGGCATTGTGGTGTATACAGACAAAGCCTAATGATCGACCATCAATGAAGAAAGTTGTGGAGATGCTTGAACAAGATGATGAAGAATTGGAAATGTCTCCCAAGCCTTACTTCTATCCACTTGATGAACCTGAAGGCGAAGTTGGAGAAGATAGCAGTTCAAGGGTATCCTCTGATATGTCATCAGTTAGTGGTTCCAAAGAATAG 1905 0.4005 MWTTKVTYADKTMCSPGWCGRHHIRYPFRLNNSSPSYCGDHRYTLSCESDNQLFLYLKSIKLKVHSINYNNYTIRLVDASVALHTHDHSSLLPYSLTSSNFSSGKDEPYHDWFRYFHNRHLDLIRLTKQMVYLMRCPPYGAEESSSASATCMNGSYALGSTFYVSDLGKSLQDLAFGDSCHIEWMYMTSWPAEIKDRNISCTDIHHMLLYGFELSWLKVYCKNDAILSDRNKVICYKPALILKSYVLSWIVICLVDGTILFVLAKFVLGAPCIVILCIYKWRRRHLSIYDSIEDFLRSDNNIMPIRYSYKEIKNITEKFKTKLGNGGYGSVFQGKLRSGRLAAVKVLKEAKSNGQEFINEVATIGRIHHVNVVQLIGFCVEGSKRCLVYELMQNGSLEKYIFSPQESASNSLSCEKLYNISLGVARGIEYLHNGCDIKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNAQTENSSRIYFPFWVYDQLHDGREITIENDTADEMKLAKKMMIVALWCIQTKPNDRPSMKKVVEMLEQDDEELEMSPKPYFYPLDEPEGEVGEDSSSRVSSDMSSVSGSKE* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2517 634 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 224 IPR045874 GO:0004672
Amo17g2517 634 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Amo17g2517 634 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 610 IPR045874 GO:0004672
Amo17g2517 634 MobiDBLite consensus disorder prediction 617 634 - -
Amo17g2517 634 MobiDBLite consensus disorder prediction 592 634 - -
Amo17g2517 634 Gene3D Phosphorylase Kinase; domain 1 296 391 - -
Amo17g2517 634 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 259 610 - -
Amo17g2517 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Amo17g2517 634 Pfam Wall-associated receptor kinase galacturonan-binding 14 78 IPR025287 GO:0030247
Amo17g2517 634 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Amo17g2517 634 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 224 - -
Amo17g2517 634 Pfam Protein kinase domain 320 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2517 634 ProSiteProfiles Protein kinase domain profile. 317 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2517 634 SUPERFAMILY Protein kinase-like (PK-like) 298 590 IPR011009 -
Amo17g2517 634 SMART serkin_6 317 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2517 Amo-Chr17 123475217 123478368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2517 302 625 Receptor kinase-like Gene Family AT4G18250 48.955 8.85e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo17g2517 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2517 - - aip:107607706 1035.02