Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2515 ATGGAAAACGACGTCTTGGCACTGCTAACTTCAGAACGTCGAAGACTAGAACACTGGTTGCTCATGCGGCGACGGGCTAATGACGGGAATGTGCCGACGAGGAGGTCGACGACAATCAGAGATGCTAATGTGTCTAGAGAAGTAGCAATGGCAGCAAGGTATGATCTCATTAAGTGTATCAATGCTGGTCCAGAGCATAAGGTGTGGAAGTTCATAGTACGTGTCATTAGACTTTGGACCGTTTCTCATTTTGCAAATTCTGGGATGAAGGAACCTACTGAGATGGTTGTTCTTGATGAAGAGGGGGATACAATTCAATGCGCTATTAAAGACATATTTGTTCCTATCTTCGAGAGCCTACTCACTGAGGGCAATGTGTACGTGGTCACTAATTTTGCAGTTGCTTTAAATACCATCAAGTTCAAGCCTACTAGACATGAATTTAGAATCCACTTCAAGAGGGACACAGTTGTGCGTCCAGTACAAGATTCTTCAGTTCCATTGAACGAATTCAATTTTGTTCCGTTCAAAAAAATTCATGCAGAGTCTAGAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAGTTCACACAGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGCGGACAAAAATTAAGGGTTACGTTGTGGCAAACTTTTGTTCTTGACTTGTTCAAATATCTAAAGGAACACCCGTGTCTTACCTATGTGGTCATTCTCCAAAGGAAAAGTATAGGCGAAATTGTTCTCCAAATGGGCAAGATGAAATTTTTTAATGGGGTCATGGGTGTTTCTAACATAAACTACAATTCGAAACTCTTTATAAATGTTGAGTTTCCAGCTGCCAGGAATTTCTTTGCAAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGTCGCTGGTCTGTGATCAACCTATTTCAGTTGAGAAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCCGAGATAAAGGAGCATAATCAAACCGAGTTTGGTTGGTGGTACAAAGGATGTAAAAAGTGTCGTCGTAGCTTAAGGGAATTTGAGAAAAGATATTTCTGTCCCAAGTGTGTTGACGACTACGGATTCTATGTGCCTAGGTACAACATCTACGTAAGGGTGATAGACCACACCGACGCTGCCTCTTTTGTTTTGTTCGATGGAGAAACTGCAAAGTTTCTTGAAATTTCTGTCAGTGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAATTTCCTGTCCCGAGGAGAACAATAAGTTTAGGGATATTAAGTTCCTCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAGCCATATGTGATTCATGTGCTGAGAATGACTAATGAAAATTTCTTGGTCTCTGCTTTCCTGGATAAATACAATCCTAACCCTGGTCTTTTGTCGCATGAAAATTTTGAACTACTGAGTTTGTCTACTGGTCCATACGACCCTTCTAAGGTTTGTGAGAGTGAGTCAACTCCATCCCCTACAATTGATGAGAAACATGGTTTTAAGATTCTTGGAGCTAAGAAACATATGAAAGAGGCTGGAGACAAGTCAGTTTCATCCAAATCTAAGAAAGGAAATGGGTTGTAA 1671 0.4105 MENDVLALLTSERRRLEHWLLMRRRANDGNVPTRRSTTIRDANVSREVAMAARYDLIKCINAGPEHKVWKFIVRVIRLWTVSHFANSGMKEPTEMVVLDEEGDTIQCAIKDIFVPIFESLLTEGNVYVVTNFAVALNTIKFKPTRHEFRIHFKRDTVVRPVQDSSVPLNEFNFVPFKKIHAESREDGYLVDVIGQLASKGNLVEFTQDGKPSSYITIELDDLEGGQKLRVTLWQTFVLDLFKYLKEHPCLTYVVILQRKSIGEIVLQMGKMKFFNGVMGVSNINYNSKLFINVEFPAARNFFARVNKLDPVDGQGIMSLVCDQPISVEKDFLRLSVYKTIAEIKEHNQTEFGWWYKGCKKCRRSLREFEKRYFCPKCVDDYGFYVPRYNIYVRVIDHTDAASFVLFDGETAKFLEISVSDLRQSCVTKGVEKISCPEENNKFRDIKFLFKVQLKMRNLNSYEPYVIHVLRMTNENFLVSAFLDKYNPNPGLLSHENFELLSLSTGPYDPSKVCESESTPSPTIDEKHGFKILGAKKHMKEAGDKSVSSKSKKGNGL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2515 556 PANTHER BNAC07G49340D PROTEIN 77 467 - -
Amo17g2515 556 Pfam Replication factor-A C terminal domain 350 460 IPR013955 -
Amo17g2515 556 SUPERFAMILY Nucleic acid-binding proteins 337 476 IPR012340 -
Amo17g2515 556 Gene3D - 165 309 IPR012340 -
Amo17g2515 556 MobiDBLite consensus disorder prediction 536 556 - -
Amo17g2515 556 CDD RPA1_DBD_B_like 191 296 - -
Amo17g2515 556 SUPERFAMILY Nucleic acid-binding proteins 171 305 IPR012340 -
Amo17g2515 556 CDD RPA1_DBD_C 323 477 IPR013955 -
Amo17g2515 556 Gene3D - 57 164 IPR012340 -
Amo17g2515 556 PANTHER REPLICATION FACTOR A 1, RFA1 77 467 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g2515 556 Pfam Domain of unknown function DUF223 94 183 IPR003871 -
Amo17g2515 556 SUPERFAMILY Nucleic acid-binding proteins 64 163 IPR012340 -
Amo17g2515 556 CDD RPA1_DBD_A_like 73 158 - -
Amo17g2515 556 Gene3D - 325 480 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2515 Amo-Chr17 123202287 123206617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2515 52 406 Core DNA Replication Machinery Family AT2G06510 23.618 1.36e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2515 - - adu:107477146 833.558