Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2514 ATGTCGTCGACGCTTCTGGAAGTGACACGTGCCTCGCACGAGGAAGTGGAACGGTTGGAAAGGGTGATAGTGAAGGACCTTCAGAATGAGCCAACTTCCAATAAAGACCGCTTGTTTCAGAGCCACCGCGTTCGGAACATGATTGACACCATTACTTCCACCACACACAAGCTTATTGAGATATATGAGGATAATGACAATGCCAGGAAGGACGAGATTGCTGCACTCGGAGGTCAAACTGCTACTGGAGTCAACAATGTATTTAGTGCGTTCTATGATCGTCTCAAAGAGATACGAGAGTATCACAGGAAGCACCCGGTTGCCCGGGTTGTTGATGCTAATGATGATTATGAAGCACTCCTTAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGCCGATACTTAGATATGCATGAGCTGTACCATCAATATATCAATTCAAAATTTGGAGAGCCAATTGAGTATTCTGCGTATCTTGATATTTTCCCAGAGGCAGACAAGATTCCACGCAAGAAGAAAATGACAAGGCAGTACAGAGAATATATGGAGAATCTTTTGGAGTATCTTTTGTATTTTTTCCAGCGGACAGAGCCCCTGCAAGATGTTGATCGAATTTTCTCGAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACACGGATGGGAGAATGAAAATCAGGACAATGGACACGCACCTGCTCAGCATGCTGCACTTGATCTTGATTATTACAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCAGCATTAGGACTTAAGACTGGTGGCACCATTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACACCTCTTGAAAAACTGGACAAGAAGCATTTTGCTAAGGGAGCACGTGCTTCAGAGAAAAAAGGGGTTGCTCCAGTTCCACAAGAAGATGCAAATTCAAAAGAAATTGCATTAATGGAGGCCAAAATGAAGAAGCTGTGTGATTTGTTAGAAGACGTGATTTGTACAATGTATAGCTCATATATGATTGCATTTACTTTTGATACTTGCCAGGAAGAGACACAAGAGGACACTGAAAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAGTTGCCAATGGGATGGGATGGGAAGCCCATACCTTACTGGTTGTATAAGTTGCATGGTCTTGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTACTGGGGGCGTCGGGCTTTTGAACGTCATTTTAAAGAGTGGCGCCATCAGCATGGCATGCGATGCCTTGGTATACCAAATACCAAAAATTTCAATGAGATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATTTGGAAGAAGAGTACGAAGACAAGGAAGGGAACATCTATAATAAGAAGACGTACACTGATTTACAGCGCCAGGGACTCATATGA 1512 0.4339 MSSTLLEVTRASHEEVERLERVIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTHKLIEIYEDNDNARKDEIAALGGQTATGVNNVFSAFYDRLKEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDIFPEADKIPRKKKMTRQYREYMENLLEYLLYFFQRTEPLQDVDRIFSKVTTEFEENWAAGKVHGWENENQDNGHAPAQHAALDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFAKGARASEKKGVAPVPQEDANSKEIALMEAKMKKLCDLLEDVICTMYSSYMIAFTFDTCQEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2514 503 Pfam SF3a60/Prp9 C-terminal 384 503 IPR024598 GO:0000398|GO:0003723|GO:0005681
Amo17g2514 503 Pfam Replication stress response SDE2 C-terminal 224 305 - -
Amo17g2514 503 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 128 177 IPR031774 -
Amo17g2514 503 PANTHER SPLICING FACTOR SF3A-RELATED 1 503 - -
Amo17g2514 503 ProSiteProfiles Zinc finger matrin-type profile. 408 439 IPR000690 GO:0003676|GO:0005634|GO:0008270
Amo17g2514 503 PANTHER BNAA03G01920D PROTEIN 1 503 - -
Amo17g2514 503 Pfam Splicing factor SF3a60 binding domain 85 106 IPR021966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2514 Amo-Chr17 123148499 123152725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2514 1 503 C2H2 Transcription Factor Family AT5G06160 71.569 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2514 K12827 - gmx:100815393 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2514 17 123148499 123152725 Amo17g2514 17 123148499 123152725 ECH
Amo08g0467 08 8826657 8830883 Amo17g2514 17 123148499 123152725 hybridization