Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2510 ATGATCATAAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAGACTCAGTGACTCGGTTGGGAAGAACGACGAGTGCTCTGAAACTCGGAAGAAGAGGAAGAAGACCAAYAGCAACGGATACTACCCTCTGAACCTCCTCGGTGACGTCGCCGCCGGCGTGATTCCGATGAGTTTACACGGCCTGCTGAGCGCCGCCGGTGTGTCGGAGAAGGGATTCTCCGCTTCGTGGTGCACTGAAGTCTCATGCTCCCCTAGCGGCGAGGTGGATTCGACAAACGAAGGAGGAGGTGGCGGAGTTGGAAACGGTGTCCTTCGTGTCAATAGGAACCGTGCYGGCGGTGAGGTTCAGCGGCCGGCACTGGTTCGAACCTCACGGGGGCGCGTGCAGGTGCTTCCTTCGAGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGTAAGAATAACCATGGCAGCTTRCGTGATTGCGATTTCGATGATGAAGAATACGAATGCAAGCATGAGAGGTTAAGSTTCAAGGCACCAAAGAATGGGAGGAAATTGAGGAACGATGAAAAAACACGTCACAAGCATCGAAAGTACTCGGCACTGTGTGATGTTGGAGAGTTAATGAGGGATTGCAAGGATTTTGGTTCGAAGCGGCGTGACAGCGTTTTGGTTGAGGATGAAAATGGGAGGTTTGTGGAGGTGGAAGGAGTTGAGCTAATGGGGAGTAAGAGGAGTGAAGGGCAATATGGTCCAGAAGATTTTTATGCTGGTGATATAGTGTGGGCAAAAGCTGGGAAAAAGGAACCTTTTTGGCCAGCCATTGTGATTGATCCTATGACTCAGGCACCTGAGCTTGTGCTCCGCTCTTGTATAGCTGATGCAGCTTGTGTCATGTTCCTTGGTTATGCTGGGAACCAAAGCCAAAGGGACTATGCATGGGTGAAGCATGGAATGATTTTTCCATTTATGGATTTTGTAGACAGGTTTCAGGGGCAGTCTGAACTTAGTTCCTATGATTCTTCTGATTTCCAAACGGCAATAGAGGAGGCATTCTTAGCAGACCAGGGCTTCACAGAGAAGTTGATAGCTGATATAAATGCAGCAGCCAGTAATGCCGGATTTGATGATACTCTTCTCAGAGCCCTTCATAGGGTCACTGGTTCAAACCAGTATGCAGGGTATCACTTTCTGAATCAGGATTTATTTGATAAGAAAGACACAAGACCCTGTGAAGCCTGTGGATTGCACCTTCCTTTGTCAAAGAAATTGAAGGATTTGGCTCTGAATGGCAAATTCCTGTGTAAAACATGTGCTAGGTTAACAAAATCAAATCATTATTGTGGGATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGTTGGGTTCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGCGGCAAGATTTCTCGAAACCATTTCAAGAATCTTGAGGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATCCTGAAAAACCACAGCCAAGAGTCAAATCGAACAAAAACAATGGGCAGCTAGGAGGGCTTCCAAATAAGGTCACCGTTCTCTGCAATGGCGTGGAAGGCATATATTTTTCAAGCCTTCACTTAGTTGTTTGCAAGTGYGGTTTTTGTGGGACTGAAAAACARGCACTCAGTGACTGGGAACGACACACAGGTTCTAAATTAAGAAACTGGAAAACAAGTATTAGGGTCAAAGGCTCCATGTTACCACTTGAACAGTGGATGCTGCAATTGGCTGAGGTCCATGCTAATGCTCAAGTTTCTGTCAAACCTAAAAAGCCTTCTCTAAAAGAGAGGAAGCAGAAGTTGCTTGCCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAATGGACGACAGAACGATGTGCTGTTTGTAGATGGGTTGAGGACTGGGACTACAACAAAATTATCATTTGCATCCGATGCCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCAAGACTTCACATCTTGGGTCTGTAAAGCTTGTGAGACACCTAACATCAAGCGTGAGTGTTGTCTTTGTCCTGTCAAAGGCGGTGCTTTGAAGCCAACCGATATTGACTCGTTATGGGTGCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTCCCAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTGTTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGTAAGTGTTCCACTTATTTCCACGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATATTTCTGAGAAAAATGGTAAGCAGACAACAAGAATGGTCTCTTATTGTGCTTACCACAGGGCCCCCAATCCTGATACTGTTTTAATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAGAACCTTCTCCAAACTAAGAGAAAAACCGGATCTAGGTTAATCGCTTCAAACAGAGTAAAGCAAGAACATCCTCCCATTGATAACGCCGAGAACGAGCCGTTATCTGCCGCTAGGTGTCGTATCTTTCAAAGGACAAATCCAACAATAAAGAGAGCGGCAGAGGAAACCGTTCCGCATAGGGTTGGAGGACATCGCCGTCACGCTTTAGATGCGATACAGAAACTAAATACATACAGAGCAGTAGAGGAACCTCCAACATTTTCTTCCTTTAGAGAACGCCTTCGCCACTTACAGAAAACCGAAAACGAACGAGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGCCTCTTTGCACGCAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGAGAACAAGTGCGAGGCAGCATTGCGGATTTGAGGGAGGCGCGCTATCGGGCCGAAGGGAAAGATTGCTATCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCCCGGCTAATCAATCATTCTTGTATGCCAAATTGCTACGCAAGGATCATGAGCGTTGGTGACGATGAGAGCCGGATCGTACTCATTGCTAAGACAAACGTATCTACCGGCGACGAGTTAACATATGACTACTTATTTGATCCTGACGAGCCTGATGAATTTAAGGTCCCATGTCTATGTAAAGCTCCAAATTGTCGAAAATTCATGAATTAG 3225 0.4536 MIIKRNLKSQMPSLKRCRLSDSVGKNDECSETRKKRKKTNSNGYYPLNLLGDVAAGVIPMSLHGLLSAAGVSEKGFSASWCTEVSCSPSGEVDSTNEGGGGGVGNGVLRVNRNRAGGEVQRPALVRTSRGRVQVLPSRFNDSVIDNWRKESKNNHGSLRDCDFDDEEYECKHERLXFKAPKNGRKLRNDEKTRHKHRKYSALCDVGELMRDCKDFGSKRRDSVLVEDENGRFVEVEGVELMGSKRSEGQYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNQSQRDYAWVKHGMIFPFMDFVDRFQGQSELSSYDSSDFQTAIEEAFLADQGFTEKLIADINAAASNAGFDDTLLRALHRVTGSNQYAGYHFLNQDLFDKKDTRPCEACGLHLPLSKKLKDLALNGKFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECGKISRNHFKNLEGTDYYCPTCKAKFDFELSDPEKPQPRVKSNKNNGQLGGLPNKVTVLCNGVEGIYFSSLHLVVCKCGFCGTEKQALSDWERHTGSKLRNWKTSIRVKGSMLPLEQWMLQLAEVHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVQDFTSWVCKACETPNIKRECCLCPVKGGALKPTDIDSLWVHVTCAWFRPEVSFPSDEKMEPALGILSIPSNSFVKICVVCKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKNLLQTKRKTGSRLIASNRVKQEHPPIDNAENEPLSAARCRIFQRTNPTIKRAAEETVPHRVGGHRRHALDAIQKLNTYRAVEEPPTFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSTGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2510 1074 Pfam PHD-finger 655 689 - -
Amo17g2510 1074 SMART set_7 932 1055 IPR001214 GO:0005515
Amo17g2510 1074 Gene3D SET domain 862 1074 IPR046341 -
Amo17g2510 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 503 IPR013083 -
Amo17g2510 1074 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1074 IPR025780 -
Amo17g2510 1074 CDD ePHD_ATX3_4_5_like 697 808 IPR041955 -
Amo17g2510 1074 Pfam PHD-zinc-finger like domain 696 808 - -
Amo17g2510 1074 SUPERFAMILY SET domain 924 1071 IPR046341 -
Amo17g2510 1074 ProSiteProfiles Zinc finger PHD-type profile. 445 501 IPR019787 -
Amo17g2510 1074 Pfam PHD-finger 447 500 IPR019787 -
Amo17g2510 1074 SMART PHD_3 642 689 IPR001965 -
Amo17g2510 1074 SMART PHD_3 447 499 IPR001965 -
Amo17g2510 1074 SMART PHD_3 753 809 IPR001965 -
Amo17g2510 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 811 IPR013083 -
Amo17g2510 1074 SMART PostSET_3 1058 1074 IPR003616 -
Amo17g2510 1074 CDD PHD_ATX3_4_5_like 642 688 IPR042011 -
Amo17g2510 1074 ProSitePatterns Zinc finger PHD-type signature. 643 688 IPR019786 -
Amo17g2510 1074 Gene3D - 251 358 - -
Amo17g2510 1074 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1074 - -
Amo17g2510 1074 SUPERFAMILY FYVE/PHD zinc finger 444 502 IPR011011 -
Amo17g2510 1074 ProSiteProfiles PWWP domain profile. 257 326 IPR000313 -
Amo17g2510 1074 SUPERFAMILY FYVE/PHD zinc finger 641 705 IPR011011 -
Amo17g2510 1074 PANTHER PHD FINGER PROTEINS 1 1074 - -
Amo17g2510 1074 ProSiteProfiles Zinc finger PHD-type profile. 640 691 IPR019787 -
Amo17g2510 1074 CDD PHD_TCF19_like 448 498 - -
Amo17g2510 1074 Pfam SET domain 943 1048 IPR001214 GO:0005515
Amo17g2510 1074 ProSiteProfiles SET domain profile. 932 1049 IPR001214 GO:0005515
Amo17g2510 1074 ProSiteProfiles Extended PHD (ePHD) domain profile. 694 809 IPR034732 -
Amo17g2510 1074 CDD SET_SETD1-like 919 1070 - -
Amo17g2510 1074 ProSiteProfiles Post-SET domain profile. 1058 1074 IPR003616 -
Amo17g2510 1074 SUPERFAMILY Tudor/PWWP/MBT 250 354 - -
Amo17g2510 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 691 IPR013083 -
Amo17g2510 1074 Pfam PWWP domain 258 351 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2510 Amo-Chr17 123045929 123053700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2510 643 808 C2H2 Transcription Factor Family AT3G14740 33.908 5.50e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo17g2510 zf-HC5HC2H_2 1.6e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2510 - - aprc:113853254 1778.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2510 17 123045929 123053700 Amo17g2510 17 123045929 123053700 ECH