Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2499 ATGGAGTACGGAAGGCTTGGTCCTACTGACTTATCTCGTGCCGATGAAACTCCGGTTAATAGGCCGAGATCCTCTACAACTGCCAACACCAAAATTATACTCTTCTCGCTTCTTGCTATTGTTCTCATTGTCGCTTCTGCCATCTCCGCCGTACTTGTTACCGTCGTCCGATCTCGCGCTTCCACCGACGACGGACGATTAAAGGAACCTACGCTCGCTGGCAAACCGACGCAGGCCATCTCACGCACCTGCAGCAGGACAAGGTTCCCGGACCTTTGCGTTAACTCGCTTCTCGATTTTCCGGGATCCACGGCGGCGACGGAGCGGGACTTAGTCCACATTTCCTTCAACATGACGCTGCAACACTTTACTAAAGCGCTCTACATCTCCGCTGCGATTTCCTCCTCCGGTGTGTACGCCTCCATGGATCCACGCTCCCGTGCCGCATACGACGACTGCCTTGAGCTTCTCGACGAGTCCGTGGACGCCATATCAAGATCTCTCACTACAGTCTCTCCCTCCGGCGCATCTCCCGGCGGCACTGTACGACCGCTTGGATCGTCCTCGGACGACGTGCTCACGTGGCTGAGCGCCGCGCTTACAAACCAGGAGACGTGCGCCGAGGGGATGGAAGGCGCCTCCGGCGCCGTGAAGAGCCAGATGGTGAACAACCTGAAGGACTTGTCGGAGCTGGTGAGTAATTGTTTGGCGATATTCTCGGCTTCCGGTGCCGGCGACGACTTCTCCGGTGTCCCTATACAGAACCGGAGAAGGTTGATGGCAATGCGAAAGGAAGAGGTGGCGGAGAAGGAGGATTTCCCTAAGTGGCTGAGTAAAAGAGATAGGAGGTTGTTGAGTTTACCGGTTTCGGCCGTACAGGCGGATGTCATCGTCTCAAAGGACGGTAACGGCTCCGTCAAGACCATCGCCGAAGCCATTAAGAAGGTGCCGGAGTACGGTAGCCGGCGATTTGTTATTTACATAAAGGCAGGAAGGTACGAAGAGGACAATTTAAAGGTGGGACGGAAGAAAACCAACGTCATGATCATAGGGGACGGCAAGGGCAAGACGGTCATCACGGGCGGTAGAAACGTTTTGCAGGAAATGACCACATTTCATACTGCATCCTTTGCTGCGAGTGGCTCTGGATTCATCGCAAGAGACATGACATTCGAGAACTACGCGGGCCCAGCGAAGCACCAAGCGGTGGCTCTCCGCCTCAGTTCAGACCACGCGGTGGTTTACCGGTGCAACGTCATAGGCTACCAAGACACATGCTACGTTCACTCAAACCGTCAATTCTTCAGAGAATGCGACATATACGGTACCGTAGACTTCATATTCGGCAACGCCGCAGTGGTATTCCAGAACTGCAGCCTCTACGCTCGAAAGCCCATGCCCCAACAAAAAAACACAATAACGGCCCAAAACAGAAAAGACCCGAATCAGAACACAGGCATTTCGATCCATAACTSTCGGATCCTAGCCACGTCAGATCTCSAGGCATCWAAGGGTAGCTTCCCAACATATCTGGGCCGTCCATGGAAAATGTACGCTAGGACCGTATACATGATATCATACATCGGTGATCACGTGCATCCACGTGGATGGTTAGAGTGGAACACAAGCAATTTTGCACTGGACACGTGTTACTACGGTGAGTACATGAATTATGGGCCGGGTGCTGCCATCGGTCAACGGGTTAAATGGGCTGGGTATCGGATCATCACGTCCACCGTGGAAGCAAGCAGATTCACGGTGGGCCAATTCATTTCAGGCTCCTCGTGGTTGCCGTCCACCGGAGTGGCRTTTATTTCTGGCCTATCAACCTGA 1833 0.5346 MEYGRLGPTDLSRADETPVNRPRSSTTANTKIILFSLLAIVLIVASAISAVLVTVVRSRASTDDGRLKEPTLAGKPTQAISRTCSRTRFPDLCVNSLLDFPGSTAATERDLVHISFNMTLQHFTKALYISAAISSSGVYASMDPRSRAAYDDCLELLDESVDAISRSLTTVSPSGASPGGTVRPLGSSSDDVLTWLSAALTNQETCAEGMEGASGAVKSQMVNNLKDLSELVSNCLAIFSASGAGDDFSGVPIQNRRRLMAMRKEEVAEKEDFPKWLSKRDRRLLSLPVSAVQADVIVSKDGNGSVKTIAEAIKKVPEYGSRRFVIYIKAGRYEEDNLKVGRKKTNVMIIGDGKGKTVITGGRNVLQEMTTFHTASFAASGSGFIARDMTFENYAGPAKHQAVALRLSSDHAVVYRCNVIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHNXRILATSDLXASKGSFPTYLGRPWKMYARTVYMISYIGDHVHPRGWLEWNTSNFALDTCYYGEYMNYGPGAAIGQRVKWAGYRIITSTVEASRFTVGQFISGSSWLPSTGVAFISGLST* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2499 610 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 240 IPR035513 -
Amo17g2499 610 SUPERFAMILY Pectin lyase-like 290 607 IPR011050 -
Amo17g2499 610 MobiDBLite consensus disorder prediction 169 188 - -
Amo17g2499 610 Gene3D - 289 608 IPR012334 -
Amo17g2499 610 TIGRFAM PME_inhib: pectinesterase inhibitor domain 67 239 IPR006501 GO:0004857
Amo17g2499 610 PANTHER PECTINESTERASE 22 608 - -
Amo17g2499 610 SMART PMEI_2 75 238 IPR006501 GO:0004857
Amo17g2499 610 PANTHER PECTINESTERASE 22 608 - -
Amo17g2499 610 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g2499 610 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 241 IPR035513 -
Amo17g2499 610 CDD PMEI-like_3 84 241 - -
Amo17g2499 610 Pfam Plant invertase/pectin methylesterase inhibitor 79 238 IPR006501 GO:0004857
Amo17g2499 610 ProSitePatterns Pectinesterase signature 2. 440 449 IPR033131 -
Amo17g2499 610 Pfam Pectinesterase 295 593 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2499 Amo-Chr17 122779482 122783867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2499 1 609 Carbohydrate Esterase AT5G53370 62.541 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2499 - - gmx:100808236 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2499 17 122779482 122783867 Amo17g2499 17 122779482 122783867 ECH
Amo08g0443 08 8504621 8508727 Amo17g2499 17 122779482 122783867 hybridization