Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2492 ATGGCTCCTGTGTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTCATCTGGGAGGGTACGCCTAGAAGTGTTCGGGATAGCCACCGGAAAGTTAGGGATAGTCATGATGGCCTCATTATTCAACGAAACATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAGCTCAGAGTCACTGGAAGAATATGGAAGGAACAACAGAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGTAGCTGA 306 0.4771 MAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2492 101 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 80 IPR008974 GO:0005515
Amo17g2492 101 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 93 - -
Amo17g2492 101 Pfam Seven in absentia protein family 2 80 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo17g2492 101 PANTHER OS05G0238200 PROTEIN 1 93 - -
Amo17g2492 101 SUPERFAMILY TRAF domain-like 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2492 Amo-Chr17 122392782 122393087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2492 1 87 C3H Transcription Factor Family AT2G41980 80.460 6.24e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2492 K04506 - fve:101313744 210.305