Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2491 ATGGGGTATAAAAGTTGTAACAAGTTGATTGATTTGCAGTGCCACAATGGGCACACGCTGTGTTCCACATGTAAAACAAGGGTACACAACCGGTGCCCCACTTGTAGACAAGAGCTTGGAGATATCAGGTGCCTAGCCTTGGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTACTATTCCCTTGGATGTCCAGAAATATTTCCATACTACAGCAAGCTTAAGCATGAGACTGTATGCAATTTTAGGCCATACAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTCGCTCATTTGAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATAGATATGTGAAATCAAATCCCAGGGAAGTAGAGAACGCAACCTGGATGCTCACAGTAAGTATATCAGATAATATACGTTGCTGTTAA 459 0.4357 MGYKSCNKLIDLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVSISDNIRCC* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2491 152 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 13 143 - -
Amo17g2491 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 13 143 - -
Amo17g2491 152 ProSiteProfiles Zinc finger SIAH-type profile. 53 113 IPR013010 GO:0008270
Amo17g2491 152 SUPERFAMILY TRAF domain-like 53 143 - -
Amo17g2491 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 108 IPR013083 -
Amo17g2491 152 Pfam Seven in absentia protein family 42 143 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2491 Amo-Chr17 122392101 122392559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2491 13 143 C3H Transcription Factor Family AT2G41980 82.443 1.78e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2491 K04506 - gmx:100810573 292.352