Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2472 ATGGCCTTAACAAGCTCACATATACAAAGGTTCCTCTTGGGCAAGCTCCATAGCCGCTTCTCCTCCAACCACAGAAACCCCTTTGCTGCTGTTACATGCACAAGCAGGTGCTACTCTGCCATTGCCATTGATGCACCTTCATCTTTAGCTGAGGCTCCTGGTGTAAGATGGGGATCCATAGCTTTGCAGGGTTTAAGGGAAGAGATGGAGGATGATATCATTGTTCGCCCTGATGGCCTTCATGGATTCTCTTTTGCTGCTGTTTTTGATGGCCATGGAGGCTTCTCTTCTGTTGAGTTCCTCAGTGCAAACTATAGGGATGAGCTCTACAAGGAGTGTCTTGAAGCCTTACAAGGTGGGTTAGTATTGGTTGAGAAAGATTTCAAAGCCACTAAAGAAGCATTAGAGCAAGCATTTGCCAAAGCTGATGCCAAGTTGTTAAAATGGCTTGAAATGAAGGGAGAGGAGGACGAATCAGGCGCAACAGCAACTGCAGTGTTCGTAGGGGATGATACGCTGCTCGTTTCGCACATTGGCGACTCATCTGTGGTTCTATCTAGAGCTGGAAAAGCAGAAATGCTTACTAGTCCTCACAGACCATATGGGAGGAACAAGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTGAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTCGGGGACTTACGATACAAAACAAAGAAGAATGAGATGCTACAAAAAGGAGTTCAAGAAGGACGATGGTCAGAAAAGTTTATCTCTCGGGTACGGCTCAACAATGATTTAGTTGTTGCATACCCTGATATTTATCAAGTAGATCTTGGCTCAGATGCTGAGTTTATAGTATTAGCGTCAGATGGCTTATGGGATTATATGAGCAGCTCAGATGCAGTTTCCTTTGTGAGGGAACAGTTACAAAAGCATGGAAACATTCAGGTAGCCTGTGAAGCACTTGCACAAGCAGCTATGGACCGTAGAACACAGGATAATGTGAGCATTATAATTGCTGATTTAGGGAAGACAGATTGGGAGAATGTGGCAGTGCAGCAACAAAATATGGTATTGGAGCTGGTTCAAGCCCTTGCTACCATTGGTATTGTGTCCATTGGAATTTGGTTTTCGTCTCAGCTTTCATTATAG 1170 0.4427 MALTSSHIQRFLLGKLHSRFSSNHRNPFAAVTCTSRCYSAIAIDAPSSLAEAPGVRWGSIALQGLREEMEDDIIVRPDGLHGFSFAAVFDGHGGFSSVEFLSANYRDELYKECLEALQGGLVLVEKDFKATKEALEQAFAKADAKLLKWLEMKGEEDESGATATAVFVGDDTLLVSHIGDSSVVLSRAGKAEMLTSPHRPYGRNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDLRYKTKKNEMLQKGVQEGRWSEKFISRVRLNNDLVVAYPDIYQVDLGSDAEFIVLASDGLWDYMSSSDAVSFVREQLQKHGNIQVACEALAQAAMDRRTQDNVSIIIADLGKTDWENVAVQQQNMVLELVQALATIGIVSIGIWFSSQLSL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2472 389 PANTHER PROTEIN PHOSPHATASE 2C 8 385 IPR015655 GO:0004722|GO:0006470
Amo17g2472 389 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Amo17g2472 389 SUPERFAMILY PP2C-like 49 349 IPR036457 -
Amo17g2472 389 Gene3D - 55 355 IPR036457 -
Amo17g2472 389 ProSiteProfiles PPM-type phosphatase domain profile. 56 348 IPR001932 -
Amo17g2472 389 PANTHER PROTEIN PHOSPHATASE 2C 57 8 385 - -
Amo17g2472 389 CDD PP2Cc 63 348 IPR001932 -
Amo17g2472 389 SMART PP2C_4 46 346 IPR001932 -
Amo17g2472 389 Pfam Protein phosphatase 2C 58 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2472 Amo-Chr17 122072993 122076077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2472 1 325 PP2C-type Phosphatase Gene Family AT4G27800 60.606 1.98e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2472 K04457 - gmx:100784071 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2472 17 122072993 122076077 Amo17g2472 17 122072993 122076077 ECH
Amo17g2472 17 122072993 122076077 Amo16g3918 16 150950693 150952587 PCT