Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2454 ATGCAGATCTCGGCTGCTAAAGTATTGGTCCAGTTGGTAGAGCTTAACACCCACGCAGTTCGGGTGAATGCCTTGAAGCTTTGTTATTGCTTGACAGAAGATGGTGACCACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGGTTTTGATGAACATCATCCAAGCTTCTGATGACGCTGAAGAGATGGTTGCTGCTATCGGCATCATCTCTAGACTACCACAGGAGACACACATAACCGAGTGGCTTCTGGATTCTGGGGCACTTCAAACAATTTCAGCATGCCTCAAAGATCAGCATAAACATGCCTCACACAGAAAGCAAGTGACAGAGAATTCTGTCCAAGCCCTTGGTCGATTTACTGTGTCGGCAAATCCAGAGTGGCAGAAGAGAGTAGCTGAAGCAGGCATGATCCCGGTGTTGGTGCAATTGCTGGCTTCTGGAACACCTCTTTCAAAACAGAAGGCAGCTATTTCGATGAAGCAGCTTTCTGAAAGTTCATACTGCTTGAGCAAGCCGATAAAGAAGGCGAGCGTTTTGAAACGGTGCTTCACAGCACAGGAAATAGGGTGCCCAGCACATCTAGGTACATGTACGATAGAGTCTTCATTCTGCATGTTACAAGGCAAGGCCTTGGAGCCCCTTGTGCGGATGCTCTCGGAACAAGACGTTGGAACATGCGAAGCATCTTTAGATGCTCTAATGACTTTGCTTGACGGCCAAACACAACATAGTGGAAGTAAGGTGCTGGTGGATGCAAACGCTGTTGCACCAATGATAAAGCTCTTGAGTGTTCCAGCTTCAAGGTTGCAGGAAAAAACTCTAACAGCATTAGGCCAAATCTTTCAACTTGATGAAGTGAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGACAGCCGTTTGAAAAGTCTTGCAGCTAAAGGCCTTGCTCAATTAGGTCTACTTGATAAACAATCTTCTTATTTTTAG 1002 0.4531 MQISAAKVLVQLVELNTHAVRVNALKLCYCLTEDGDHRNISSHITERFIKVLMNIIQASDDAEEMVAAIGIISRLPQETHITEWLLDSGALQTISACLKDQHKHASHRKQVTENSVQALGRFTVSANPEWQKRVAEAGMIPVLVQLLASGTPLSKQKAAISMKQLSESSYCLSKPIKKASVLKRCFTAQEIGCPAHLGTCTIESSFCMLQGKALEPLVRMLSEQDVGTCEASLDALMTLLDGQTQHSGSKVLVDANAVAPMIKLLSVPASRLQEKTLTALGQIFQLDEVRNKYKAMATMPLVDITQSKDSRLKSLAAKGLAQLGLLDKQSSYF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2454 333 SUPERFAMILY ARM repeat 7 320 IPR016024 -
Amo17g2454 333 Gene3D - 2 193 IPR011989 -
Amo17g2454 333 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 333 - -
Amo17g2454 333 Gene3D - 195 331 IPR011989 -
Amo17g2454 333 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 2 333 - -
Amo17g2454 333 SMART arm_5 127 167 IPR000225 GO:0005515
Amo17g2454 333 SMART arm_5 78 124 IPR000225 GO:0005515
Amo17g2454 333 SMART arm_5 244 285 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2454 Amo-Chr17 121774305 121775306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2454 4 333 U-box Gene Family AT1G76390 25.479 7.38e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2454 - - adu:107460521 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2454 17 121774305 121775306 Amo17g2454 17 121774305 121775306 ECH
Amo08g0420 08 8158734 8161921 Amo17g2454 17 121774305 121775306 hybridization