Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2453 ATGAGTGATGCAATAGCGGCTGAATTGATTTCCCAGGTGGTCTTAAATATATTTGATACTGTCAAAGTAGCGAATGAGGTTGTGATTCAGAAGGAAAATTTCAACAAGTTCTCGAGTCAGTTGGAGAAGATCTCTTCTATTTTGAAGTCTTTACCAATAGAGGATATAGAGAATCCTGAGAGCTTGAAAAATGCCTTGGATGTTCTCAACCAAGCTATTACGGTTGCTAAGCAGCTGGTTTTTGATGGGCACGGTAGAAGTAAGATTTATGTTTTGATGAATTCGAGAAGGATGGTTGCACGTTTGAAATGTTGCGGAGAAGAAATAAGGCGAGCCCTGAGGCTGATTCCTCTTGCAAGCAAAGATATAAGCGAGATGTTAGATGTGGAGTATGAAGATGAAGATGAACAAGTTTTGGAAAAAGTTGAGGGTGCGATACAAGAGAGGAATTTGGATGGAACGTATGCGAATGAGTTGTTGTGTTGTATTGCAGATGCCATGGGTGTCCCGAAGGAGAGTGATGCGTTGAAGAGAGAATTCCAAGAGTTGAAACGCGAAATGGAAAGTGCACGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGAAGCTTATTGCAGTGCTTGAAAGGGCTGATTTGATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTGGGCAGGACCCCTTTAGAGCCTCTGCATTCATTTTACTGCCCAATCTCTGGAGATATTATGCTGGACCCTGTTGAAACTTCCTCTCGCAAGACATTCGAGAGAAGTGCAATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGTTGCCCCTCGACACTCGAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGTGGAAGGACAGGAATACAATCATCACCATTTCTACCATCAAGTCCCTGCTTGAAACAAATGAACAAGAGCAAGTGCTTGAATCCTTAGACAAGCTGCAGGATTTATGCTTAGAGAGACAGATACACCTAGAGTGGTTGAAAATGGAGAATTACATGGCTCTTCTTATTGGACTTCTTGGTTCTAGAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATGACACAGACAACAAGCAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCGCTTGCGCGTCAAATTGAGGAAAGCAAACTAGCATTGAAGTTGCTTTTGGAGTTATCCAAAACTAACACCTTGCTTCAACTCATAGGAAACGTTCAAGGAGGCATACTTCTAATAGTGACAATGTTAAATAGTGATGACGTCGAAGCAGCCAAAATTGCACATGAGCTTCTGGAGAACCTGTCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTACTGAATCTTTCCACAGGAGCAAAGAATGTGAGAATACTCATGGCCGAAACCGTGTCCGAAATCGAATTGACTGAGCAGAATAAATTGTCCTTAGTTAAAGATGGGGCAGTGAGACCTCTTCTTGGACTGCTCTTGGAAAATGATGTGGAAATCAAGAAAGTGGTTGTAAAGTGTTTACTTAAGCTGTCAAGTTTGCTGGAGAATGGCATGGTGATGATTAAGCAAGGTGTTACTCAACAGCTATTAGAGTTGCTATACTCTCATAGTTTACAGTCACCTGCTCTGCAGGAACTGATCGTTGCAACAATAATGCATCTTGCCATATCAACCACCCACCAACAAGCTGAAGAGGAACGTGTATTGTTGCTTGATTCAGAGGAACAAGTATATAAATTCTTCTCTCTGGTTTCTTTGACAGAACTTGATGTACAAAACATGATTCTCAAAGCCTTTCAGGCACTATGCCAGTCTCTCTCCGGCTTCACCATCAGAATGTGGTTGAGACAGGTCTCTACTTTGATATGTCAAACAATTTTCATTCATTAA 2001 0.4178 MSDAIAAELISQVVLNIFDTVKVANEVVIQKENFNKFSSQLEKISSILKSLPIEDIENPESLKNALDVLNQAITVAKQLVFDGHGRSKIYVLMNSRRMVARLKCCGEEIRRALRLIPLASKDISEMLDVEYEDEDEQVLEKVEGAIQERNLDGTYANELLCCIADAMGVPKESDALKREFQELKREMESARSRKDVAEALRMEKLIAVLERADLITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIMLDPVETSSRKTFERSAIQRWFSQGNTLCPLTMLPLDTRILRPNKTLRHSIQEWKDRNTIITISTIKSLLETNEQEQVLESLDKLQDLCLERQIHLEWLKMENYMALLIGLLGSRNREIRKRVLLILSLLAKDDTDNKQGIAKVDGALRSIVHSLARQIEESKLALKLLLELSKTNTLLQLIGNVQGGILLIVTMLNSDDVEAAKIAHELLENLSFLDQNVIEMAKANYLKPLLLNLSTGAKNVRILMAETVSEIELTEQNKLSLVKDGAVRPLLGLLLENDVEIKKVVVKCLLKLSSLLENGMVMIKQGVTQQLLELLYSHSLQSPALQELIVATIMHLAISTTHQQAEEERVLLLDSEEQVYKFFSLVSLTELDVQNMILKAFQALCQSLSGFTIRMWLRQVSTLICQTIFIH* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2453 666 Coils Coil 173 200 - -
Amo17g2453 666 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Amo17g2453 666 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Amo17g2453 666 SUPERFAMILY RING/U-box 228 311 - -
Amo17g2453 666 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 6 658 - -
Amo17g2453 666 SUPERFAMILY ARM repeat 314 641 IPR016024 -
Amo17g2453 666 Gene3D - 317 505 IPR011989 -
Amo17g2453 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 316 IPR013083 -
Amo17g2453 666 Gene3D - 506 639 IPR011989 -
Amo17g2453 666 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 658 - -
Amo17g2453 666 Gene3D - 6 120 IPR036537 GO:0007166
Amo17g2453 666 CDD RING-Ubox_PUB 243 284 IPR045210 -
Amo17g2453 666 Pfam U-box domain 243 309 IPR003613 GO:0004842|GO:0016567
Amo17g2453 666 SMART arm_5 509 549 IPR000225 GO:0005515
Amo17g2453 666 SMART arm_5 426 467 IPR000225 GO:0005515
Amo17g2453 666 SMART arm_5 550 593 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2453 Amo-Chr17 121772119 121774272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2453 242 639 U-box Gene Family AT1G20780 27.451 1.23e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2453 - - adu:107460521 1175.23