Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2420 ATGGACAACACCATTGACCAGTTGAAATCATCTTCCTCTTCGGAAGAGGATCAGATGGACTTGATGAACATGATGATGATGCAACTTCCTAACGAATTCTCTTCACCTAATTACGCTGATGAGACCAGCGTCCAAGGATTCCACCCATCACCACAGCTTCTTGGTGCACGCAGTAGCAGTACTATGCAACTATCAGATTCAATTGATAACAGAAATTCTATCATGCCCTGGTCTTCACCATCCACCACAATCTCTTTCTCTAACAACAACACTACCTCAATGCTTCAAACAGAATTTCCATCTTTGTTGGGAAATTCAGGTGCAACGGAGAATAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATAGCGGCCATGCAGCCAATACACATAGACCCTGAGTCAGTAAAGCCACCAAAGCGGAGGAACGTGAAGATCTCGAAGGATCCACAGAGTGTGGCGGCGCGGCACAGGAGAGAAAGGATAAGTGAGAGAATAAGGATACTGCAGAGACTGGTCCCCGGAGGAACCAAGATGGACACTGCTTCAATGCTTGATGAGGCCATTCACTACGTCAAATTTCTCAAGGCTCAGATTCACTCATTGGAACGTGCTTCTTCTTCTGCAAGCAATAATAATAATAATAATGCAACTGCATCAGGTGCAGGTGCAGCTACTGCCATTGCCAATGCCCCTGGCGCCTCTTATCTTTCTCTACCTAAACCTTATCAAGGTCGAAATGCTCACCATTACGGAGATGCATGA 774 0.4599 MDNTIDQLKSSSSSEEDQMDLMNMMMMQLPNEFSSPNYADETSVQGFHPSPQLLGARSSSTMQLSDSIDNRNSIMPWSSPSTTISFSNNNTTSMLQTEFPSLLGNSGATENKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKAQIHSLERASSSASNNNNNNATASGAGAATAIANAPGASYLSLPKPYQGRNAHHYGDA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2420 257 Gene3D - 148 222 IPR036638 GO:0046983
Amo17g2420 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 208 IPR036638 GO:0046983
Amo17g2420 257 SMART finulus 155 204 IPR011598 GO:0046983
Amo17g2420 257 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 247 - -
Amo17g2420 257 Coils Coil 195 215 - -
Amo17g2420 257 Pfam Helix-loop-helix DNA-binding domain 158 198 IPR011598 GO:0046983
Amo17g2420 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Amo17g2420 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 247 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2420 Amo-Chr17 120927037 120927810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2420 75 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 63.399 4.92e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g2420 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2420 - - aip:107607656 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2420 17 120927037 120927810 Amo17g2420 17 120927037 120927810 ECH