Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2418 ATGGCTCTTCTGCTAGACAACTGCGAGAGCATTCTACTGTCGCTAGAGTCAAACAAGTCGGTGCCGGCGCCGTTTCTGACAAAGACGTACCAGCTGGTGGACGATCCAGCCACCGATCACATAGTGTCATGGGGAGAAGACCAAAGCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGAGATCTTCTTCCTAATTACTTCAAACACAATAACTTCTCAAGTTTCGTTCGCCAGCTCAATACTTATGGTTTCAGAAAGATTGTTCCGGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGAAGAAAAACCGCACACCACCCTCAACAGATAACCGCCATCAACCACCACCACTCTCCGATTCCTTCTTTCTTTCCATTCTCAAGCAGGCTCAGCATCTCGCCGCCAAACGACTCCGATGACCAAGCCAATTGGTGTGACTCTCCGCCGCCCACCGCCACACCCTGCTACAACACCTCATCCGTCACGGCGCTGTCGGAGGACAATGAGAGGCTGAGGCGGAGCAACACCATGCTCATGTCGGAGCTTGCACACATGAAGAAGCTCTACAATGACATAATCTACTTCGTTCAGAACCATGTGAAGCCAGTTCCTCCAAGCAACACTTGTTCTTCTTCTTTGCTTCTTTGCAGTAACACGCCATCATCACATTCATATGCTTCTTCCGGTGCCGCTAATGGTAACGTTTCAATGCTGCAAAGGCCGATGAACAATCTTCTCGGGTATTATTCTCAAACTCAAAACTGTCCAAGCAACACGGCAAGGAGCTCCGTCACGATTGTGGAAGCGCCACCACCCTGTAAGACCAAGCTTTTTGGAGTGCCGCTTCAGTCCAAGAAAAGGGTGCACCCTGAGTATGGGTCTAACAACCTCGCTAATTCAGAGACTAACAAGGCGCGTTTGATTTTGGAGAAGGATGACCTTGGCTTGAATCTCATGCCTCCTTCTACTACTTGTTAA 1017 0.4916 MALLLDNCESILLSLESNKSVPAPFLTKTYQLVDDPATDHIVSWGEDQSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAHHPQQITAINHHHSPIPSFFPFSSRLSISPPNDSDDQANWCDSPPPTATPCYNTSSVTALSEDNERLRRSNTMLMSELAHMKKLYNDIIYFVQNHVKPVPPSNTCSSSLLLCSNTPSSHSYASSGAANGNVSMLQRPMNNLLGYYSQTQNCPSNTARSSVTIVEAPPPCKTKLFGVPLQSKKRVHPEYGSNNLANSETNKARLILEKDDLGLNLMPPSTTC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2418 338 Gene3D - 17 116 IPR036388 -
Amo17g2418 338 PANTHER BNAC06G00310D PROTEIN 12 336 - -
Amo17g2418 338 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2418 338 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2418 338 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Amo17g2418 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 336 IPR027725 -
Amo17g2418 338 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2418 338 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2418 338 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo17g2418 338 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2418 Amo-Chr17 120835645 120837217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2418 1 336 HSF AT1G46264 54.960 6.08e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo17g2418 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2418 K09419 - gmx:100781389 491.115